-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathpub.html
711 lines (592 loc) · 25.3 KB
/
pub.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<title>pub</title>
</head>
<body>
<!-- This document was automatically generated with bibtex2html 1.99
(see http://www.lri.fr/~filliatr/bibtex2html/),
with the following command:
bibtex2html -labelname pub.bib -->
<table>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="doi:10.1098/rspb.2024.0090">1</a>]
</td>
<td class="bibtexitem">
Laura J. A. van Dijk, Brian L. Fisher, Andreia Miraldo, Robert M. Goodsell,
Elzbieta Iwaszkiewicz-Eggebrecht, Dimby Raharinjanahary, Eric Tsiriniaina
Rajoelison, Piotr Łukasik, Anders F. Andersson, Fredrik Ronquist, Tomas
Roslin, and Ayco J. M. Tack.
Temperature and water availability drive insect seasonality across a
temperate and a tropical region.
<em>Proceedings of the Royal Society B: Biological Sciences</em>,
291(2025):20240090, 2024.
[ <a href="pub_bib.html#doi:10.1098/rspb.2024.0090">bib</a> |
<a href="http://dx.doi.org/10.1098/rspb.2024.0090">DOI</a> |
<a href="http://arxiv.org/abs/https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.2024.0090">arXiv</a> |
<a href="https://royalsocietypublishing.org/doi/abs/10.1098/rspb.2024.0090">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="doi:10.1098/rstb.2023.0118">2</a>]
</td>
<td class="bibtexitem">
Ela Iwaszkiewicz-Eggebrecht, Vera Zizka, and Christina Lynggaard.
Three steps towards comparability and standardization among molecular
methods for characterizing insect communities.
<em>Philosophical Transactions of the Royal Society B: Biological
Sciences</em>, 379(1904):20230118, 2024.
[ <a href="pub_bib.html#doi:10.1098/rstb.2023.0118">bib</a> |
<a href="http://dx.doi.org/10.1098/rstb.2023.0118">DOI</a> |
<a href="http://arxiv.org/abs/https://royalsocietypublishing.org/doi/pdf/10.1098/rstb.2023.0118">arXiv</a> |
<a href="https://royalsocietypublishing.org/doi/abs/10.1098/rstb.2023.0118">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1093/sysbio/syad054">3</a>]
</td>
<td class="bibtexitem">
Chi Zhang, Fredrik Ronquist, and Tanja Stadler.
Skyline Fossilized Birth–Death Model is Robust to Violations of
Sampling Assumptions in Total-Evidence Dating.
<em>Systematic Biology</em>, 72(6):1316--1336, 08 2023.
[ <a href="pub_bib.html#10.1093/sysbio/syad054">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syad054">DOI</a> |
<a href="http://arxiv.org/abs/https://academic.oup.com/sysbio/article-pdf/72/6/1316/56917945/syad054.pdf">arXiv</a> |
<a href="https://doi.org/10.1093/sysbio/syad054">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="https://doi.org/10.1111/syen.12611">4</a>]
</td>
<td class="bibtexitem">
Jack Hearn, Erik Gobbo, José Luis Nieves-Aldrey, Antoine Branca, James A.
Nicholls, Georgios Koutsovoulos, Nicolas Lartillot, Graham N. Stone, and
Fredrik Ronquist.
Phylogenomic analysis of protein-coding genes resolves complex gall
wasp relationships.
<em>Systematic Entomology</em>, 49(1):110--137, 2024.
[ <a href="pub_bib.html#https://doi.org/10.1111/syen.12611">bib</a> |
<a href="https://doi.org/10.1111/syen.12611">DOI</a> |
<a href="http://arxiv.org/abs/https://resjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/syen.12611">arXiv</a> |
<a href="https://resjournals.onlinelibrary.wiley.com/doi/abs/10.1111/syen.12611">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1371/journal.pone.0286272">5</a>]
</td>
<td class="bibtexitem">
Elzbieta Iwaszkiewicz-Eggebrecht, Piotr Lukasik, Mateusz Buczek, Junchen
Deng, Emily A. Hartop, Harald Havnås, Monika Prus-Frankowska, Carina R.
Ugarph, Paulina Viteri, Anders F. Andersson, Tomas Roslin, Ayco J. M. Tack,
Fredrik Ronquist, and Andreia Miraldo.
Favis: Fast and versatile protocol for non-destructive metabarcoding
of bulk insect samples.
<em>PLOS ONE</em>, 18(7):1--13, 07 2023.
[ <a href="pub_bib.html#10.1371/journal.pone.0286272">bib</a> |
<a href="http://dx.doi.org/10.1371/journal.pone.0286272">DOI</a> |
<a href="https://doi.org/10.1371/journal.pone.0286272">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1093/sysbio/syac033">6</a>]
</td>
<td class="bibtexitem">
Emily Hartop, Amrita Srivathsan, Fredrik Ronquist, and Rudolf Meier.
Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data
Conundrum for Dark Taxa.
<em>Systematic Biology</em>, 71(6):1404--1422, 05 2022.
[ <a href="pub_bib.html#10.1093/sysbio/syac033">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syac033">DOI</a> |
<a href="http://arxiv.org/abs/https://academic.oup.com/sysbio/article-pdf/71/6/1404/46465829/syac033.pdf">arXiv</a> |
<a href="https://doi.org/10.1093/sysbio/syac033">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1093/sysbio/syad045">7</a>]
</td>
<td class="bibtexitem">
Jakub Truszkowski, Allison Perrigo, David Broman, Fredrik Ronquist, and
Alexandre Antonelli.
Online tree expansion could help solve the problem of scalability in
Bayesian phylogenetics.
<em>Systematic Biology</em>, page syad045, 07 2023.
[ <a href="pub_bib.html#10.1093/sysbio/syad045">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syad045">DOI</a> |
<a href="http://arxiv.org/abs/https://academic.oup.com/sysbio/advance-article-pdf/doi/10.1093/sysbio/syad045/51305994/syad045.pdf">arXiv</a> |
<a href="https://doi.org/10.1093/sysbio/syad045">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1007/978-3-031-30044-8_20">8</a>]
</td>
<td class="bibtexitem">
Daniel Lundén, Gizem Çaylak, Fredrik Ronquist, and David Broman.
Automatic alignment in higher-order probabilistic programming
languages.
In Thomas Wies, editor, <em>Programming Languages and Systems</em>,
pages 535--563, Cham, 2023. Springer Nature Switzerland.
[ <a href="pub_bib.html#10.1007/978-3-031-30044-8_20">bib</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="https://doi.org/10.1111/2041-210X.14073">9</a>]
</td>
<td class="bibtexitem">
Elzbieta Iwaszkiewicz-Eggebrecht, Emma Granqvist, Mateusz Buczek, Monika Prus,
Jan Kudlicka, Tomas Roslin, Ayco J. M. Tack, Anders F. Andersson, Andreia
Miraldo, Fredrik Ronquist, and Piotr Lukasik.
Optimizing insect metabarcoding using replicated mock communities.
<em>Methods in Ecology and Evolution</em>, 14(4):1130--1146, 2023.
[ <a href="pub_bib.html#https://doi.org/10.1111/2041-210X.14073">bib</a> |
<a href="https://doi.org/10.1111/2041-210X.14073">DOI</a> |
<a href="http://arxiv.org/abs/https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.14073">arXiv</a> |
<a href="https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.14073">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="10.1007/978-3-030-99336-8_2">10</a>]
</td>
<td class="bibtexitem">
Daniel Lundén, Joey Öhman, Jan Kudlicka, Viktor Senderov, Fredrik
Ronquist, and David Broman.
Compiling universal probabilistic programming languages with
efficient parallel sequential monte carlo inference.
In <em>Programming Languages and Systems</em>, pages 29--56, Cham, 2022.
Springer International Publishing.
[ <a href="pub_bib.html#10.1007/978-3-030-99336-8_2">bib</a> |
<a href="https://doi.org/10.1007/978-3-030-99336-8_2">DOI</a> |
<a href="https://link.springer.com/chapter/10.1007/978-3-030-99336-8_2">Url</a> |
<a href="https://link.springer.com/content/pdf/10.1007/978-3-030-99336-8.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="braga2021phylogenetic">11</a>]
</td>
<td class="bibtexitem">
Mariana P. Braga, Niklas Janz, Sören Nylin, Fredrik Ronquist, and
Michael J. Landis.
Phylogenetic reconstruction of ancestral ecological networks through
time for pierid butterflies and their host plants.
<em>Ecology Letters</em>, 24:2134 --2145, 2021.
[ <a href="pub_bib.html#braga2021phylogenetic">bib</a> |
<a href="https://doi.org/10.1111/ele.13842">DOI</a> |
<a href="https://www.onlinelibrary.wiley.com/doi/abs/10.1111/ele.13842">Url</a> |
<a href="https://www.onlinelibrary.wiley.com/doi/pdf/10.1111/ele.13842">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="valan2021awakening">12</a>]
</td>
<td class="bibtexitem">
Miroslav Valan, Dominik Vondráček, and Fredrik Ronquist.
Awakening a taxonomist's third eye: exploring the utility of computer
vision and deep learning in insect systematics.
<em>Systematic Entomology</em>, 46:757--766, 2021.
[ <a href="pub_bib.html#valan2021awakening">bib</a> |
<a href="https://doi.org/10.1111/syen.12492">DOI</a> |
<a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/syen.12492">Url</a> |
<a href="https://onlinelibrary.wiley.com/doi/pdf/10.1111/syen.12492">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Hartop1544804">13</a>]
</td>
<td class="bibtexitem">
Emily Hartop.
<em>A multi-faceted approach to a "dark taxon" : The hyperdiverse
and poorly known scuttle flies (Diptera: Phoridae)</em>.
PhD thesis, Station Linné, 2021.
[ <a href="pub_bib.html#Hartop1544804">bib</a> |
<a href="http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-192276">Url</a> |
<a href="http://www.diva-portal.org/smash/get/diva2:1544804/FULLTEXT01.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="hartop2021large">14</a>]
</td>
<td class="bibtexitem">
Emily Hartop, Amrita Srivathsan, Fredrik Ronquist, and Rudolf Meier.
Large-scale Integrative Taxonomy (LIT): resolving the data conundrum
for dark taxa.
<em>bioRxiv</em>, 2021.
[ <a href="pub_bib.html#hartop2021large">bib</a> |
<a href="http://dx.doi.org/10.1101/2021.04.13.439467">DOI</a> |
<a href="https://www.biorxiv.org/content/early/2021/05/09/2021.04.13.439467">Url</a> |
<a href="https://www.biorxiv.org/content/early/2021/05/09/2021.04.13.439467.full.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="valan2021automated">15</a>]
</td>
<td class="bibtexitem">
Miroslav Valan.
<em>Automated image-based taxon identification using deep learning
and citizen-science contributions</em>.
PhD thesis, Stockholm University, Department of Zoology, 2021.
[ <a href="pub_bib.html#valan2021automated">bib</a> |
<a href="http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-189460">Url</a> |
<a href="http://www.diva-portal.org/smash/get/diva2:1522250/FULLTEXT01.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="ronquist2021universal">16</a>]
</td>
<td class="bibtexitem">
Fredrik Ronquist, Jan Kudlicka, Viktor Senderov, Johannes Borgström,
Nicolas Lartillot, Daniel Lundén, Lawrence D. Murray, Thomas B.
Schön, and David Broman.
Universal probabilistic programming offers a powerful approach to
statistical phylogenetics.
<em>Communications Biology</em>, 4:244, 2021.
[ <a href="pub_bib.html#ronquist2021universal">bib</a> |
<a href="https://doi.org/10.1038/s42003-021-01753-7">DOI</a> |
<a href="https://www.nature.com/articles/s42003-021-01753-7">Url</a> |
<a href="https://www.nature.com/articles/s42003-021-01753-7.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="arribas2021connecting">17</a>]
</td>
<td class="bibtexitem">
Paula Arribas, Carmelo Andújar, Martin I. Bidartondo, Kristine Bohmann,
Éric Coissac, Simon Creer, Jeremy R. deWaard, Vasco Elbrecht, Gentile F.
Ficetola, Marta Goberna, Susan Kennedy, Henrik Krehenwinkel, Florian Leese,
Vojtech Novotny, Fredrik Ronquist, Douglas W. Yu, Lucie Zinger, Thomas J.
Creedy, Emmanouil Meramveliotakis, Víctor Noguerales, Isaac Overcast,
Hélène Morlon, Alfried P. Vogler, Anna Papadopoulou, and Brent C.
Emerson.
Connecting high-throughput biodiversity inventories: Opportunities
for a site-based genomic framework for global integration and synthesis.
<em>Molecular Ecology</em>, 30:1120--1135, 2021.
[ <a href="pub_bib.html#arribas2021connecting">bib</a> |
<a href="https://doi.org/10.1111/mec.15797">DOI</a> |
<a href="https://onlinelibrary.wiley.com/doi/full/10.1111/mec.15797">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="hartop2021scuttling">18</a>]
</td>
<td class="bibtexitem">
Emily Hartop, Sibylle Häggqvist, Sven Olof Ulefors, and Fredrik Ronquist.
Scuttling towards monophyly: phylogeny of the mega-diverse genus
<i>Megaselia</i> (Diptera: Phoridae).
<em>Systematic Entomology</em>, 46:71--82, 2021.
[ <a href="pub_bib.html#hartop2021scuttling">bib</a> |
<a href="http://dx.doi.org/10.1111/syen.12448">DOI</a> |
<a href="http://doi.org/10.1111/syen.12448">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="marquina2021effect">19</a>]
</td>
<td class="bibtexitem">
Daniel Marquina, Mateusz Buczek, Fredrik Ronquist, and Piotr Lukasik.
The effect of ethanol concentration on the morphological and
molecular preservation of insects for biodiversity studies.
<em>PeerJ</em>, 9:e10799, 2021.
[ <a href="pub_bib.html#marquina2021effect">bib</a> |
<a href="http://dx.doi.org/10.7717/peerj.10799">DOI</a> |
<a href="https://doi.org/10.7717/peerj.10799">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="braga2020bayesian">20</a>]
</td>
<td class="bibtexitem">
Mariana P Braga, Michael J Landis, Sören Nylin, Niklas Janz, and Fredrik
Ronquist.
Bayesian inference of ancestral host-parasite interactions under a
phylogenetic model of host repertoire evolution.
<em>Systematic Biology</em>, 69:1149--1162, 2020.
[ <a href="pub_bib.html#braga2020bayesian">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syaa019">DOI</a> |
<a href="https://doi.org/10.1093/sysbio/syaa019">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="ronquist2020completing">21</a>]
</td>
<td class="bibtexitem">
Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson,
Rasmus Hovmöller, Johannes Bergsten, Kevin Holston, Tom Britton, Johan
Abenius, Bengt Andersson, et al.
Completing Linnaeus's inventory of the Swedish insect fauna: only
5,000 species left?
<em>PLOS ONE</em>, 15(3):e0228561, 2020.
[ <a href="pub_bib.html#ronquist2020completing">bib</a> |
<a href="http://dx.doi.org/10.1371/journal.pone.0228561">DOI</a> |
<a href="https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0228561">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="kudlicka2020probabilistic">22</a>]
</td>
<td class="bibtexitem">
Jan Kudlicka, Lawrence M Murray, Fredrik Ronquist, and Thomas B Schön.
Probabilistic programming for birth-death models of evolution using
an alive particle filter with delayed sampling.
In <em>Uncertainty in Artificial Intelligence</em>, pages 679--689.
PMLR, 2020.
[ <a href="pub_bib.html#kudlicka2020probabilistic">bib</a> |
<a href="http://auai.org/uai2019/proceedings/papers/235.pdf">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="zhang2020using">23</a>]
</td>
<td class="bibtexitem">
Chi Zhang, John P Huelsenbeck, and Fredrik Ronquist.
Using parsimony-guided tree proposals to accelerate convergence in
Bayesian phylogenetic inference.
<em>Systematic Biology</em>, 69:1016--1032, 2020.
[ <a href="pub_bib.html#zhang2020using">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syaa002">DOI</a> |
<a href="https://doi.org/10.1093/sysbio/syaa002">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="karlsson2020data">24</a>]
</td>
<td class="bibtexitem">
Dave Karlsson, Mattias Forshage, Kevin Holston, and Fredrik Ronquist.
The data of the Swedish Malaise Trap Project, a countrywide
inventory of Sweden's insect fauna.
<em>Biodiversity Data Journal</em>, 8:e56286, 2020.
[ <a href="pub_bib.html#karlsson2020data">bib</a> |
<a href="http://dx.doi.org/10.3897/BDJ.8.e56286">DOI</a> |
<a href="https://doi.org/10.3897/BDJ.8.e56286">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="karlsson2020swedish">25</a>]
</td>
<td class="bibtexitem">
Dave Karlsson, Emily Hartop, Mattias Forshage, Mathias Jaschhof, and Fredrik
Ronquist.
The Swedish Malaise trap project: a 15 year retrospective on a
countrywide insect inventory.
<em>Biodiversity Data Journal</em>, 8:e47255, 2020.
[ <a href="pub_bib.html#karlsson2020swedish">bib</a> |
<a href="http://dx.doi.org/10.3897/BDJ.8.e47255">DOI</a> |
<a href="https://doi.org/10.3897/BDJ.8.e47255">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="marquina2020thesis">26</a>]
</td>
<td class="bibtexitem">
Daniel Marquina Hernández.
<em>Debugging metabarcoding for insect biodiversity studies</em>.
PhD thesis, Stockholm University, Department of Zoology, 2020.
[ <a href="pub_bib.html#marquina2020thesis">bib</a> |
<a href="http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-180293">Url</a> |
<a href="http://www.diva-portal.org/smash/get/diva2:1417107/FULLTEXT01.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="ronquist2020probabilistic">27</a>]
</td>
<td class="bibtexitem">
Fredrik Ronquist, Jan Kudlicka, Viktor Senderov, Johannes Borgström,
Nicolas Lartillot, Daniel Lundén, Lawrence Murray, Thomas B. Schön,
and David Broman.
Universal probabilistic programming offers a powerful approach to
statistical phylogenetics.
<em>bioRxiv</em>, 2020.
[ <a href="pub_bib.html#ronquist2020probabilistic">bib</a> |
<a href="http://dx.doi.org/10.1101/2020.06.16.154443">DOI</a> |
<a href="https://www.biorxiv.org/content/early/2020/12/10/2020.06.16.154443">Url</a> |
<a href="https://www.biorxiv.org/content/early/2020/12/10/2020.06.16.154443.full.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="gobbo2020inquilines">28</a>]
</td>
<td class="bibtexitem">
Erik Gobbo, Nicolas Lartillot, Jack Hearn, Graham N Stone, Yoshihisa Abe,
Christopher W Wheat, Tatsuya Ide, and Fredirik Ronquist.
From inquilines to gall inducers: Genomic signature of a life-style
transition in <i>Synergus</i> gall wasps.
<em>Genome biology and evolution</em>, 12:2060--2073, 2020.
[ <a href="pub_bib.html#gobbo2020inquilines">bib</a> |
<a href="http://dx.doi.org/10.1093/gbe/evaa204">DOI</a> |
<a href="https://doi.org/10.1093/gbe/evaa204">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="glockler2019dina">29</a>]
</td>
<td class="bibtexitem">
Falko Glöckler, James Macklin, Fredrik Ronquist, and Jana Hoffmann.
DINA: Open Source and Open Services-A modern approach for natural
history collection management systems and research.
<em>Biodiversity Information Science and Standards</em>, 2019.
[ <a href="pub_bib.html#glockler2019dina">bib</a> |
<a href="https://doi.org/10.3897/biss.3.38059">DOI</a> |
<a href="https://biss.pensoft.net/article/38059/list/9/">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="marquina2019new">30</a>]
</td>
<td class="bibtexitem">
Daniel Marquina, Anders F Andersson, and Fredrik Ronquist.
New mitochondrial primers for metabarcoding of insects, designed and
evaluated using <i>in silico</i> methods.
<em>Molecular Ecology Resources</em>, 19(1):90--104, 2019.
[ <a href="pub_bib.html#marquina2019new">bib</a> |
<a href="https://doi.org/10.1111/1755-0998.12942">DOI</a> |
<a href="https://doi.org/10.1111/1755-0998.12942">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="marquina2019establishing">31</a>]
</td>
<td class="bibtexitem">
Daniel Marquina, Rodrigo Esparza-Salas, Tomas Roslin, and Fredrik Ronquist.
Establishing arthropod community composition using metabarcoding:
Surprising inconsistencies between soil samples and preservative ethanol and
homogenate from Malaise trap catches.
<em>Molecular ecology resources</em>, 19(6):1516--1530, 2019.
[ <a href="pub_bib.html#marquina2019establishing">bib</a> |
<a href="http://dx.doi.org/10.1111/1755-0998.13071">DOI</a> |
<a href="https://doi.org/10.1111/1755-0998.13071">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="valan2019automated">32</a>]
</td>
<td class="bibtexitem">
Miroslav Valan, Karoly Makonyi, Atsuto Maki, Dominik Vondráček, and
Fredrik Ronquist.
Automated taxonomic identification of insects with expert-level
accuracy using effective feature transfer from convolutional networks.
<em>Systematic Biology</em>, 68(6):876--895, 2019.
[ <a href="pub_bib.html#valan2019automated">bib</a> |
<a href="http://dx.doi.org/10.1093/sysbio/syz014">DOI</a> |
<a href="https://doi.org/10.1093/sysbio/syz014">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="braga2019evolution">33</a>]
</td>
<td class="bibtexitem">
Mariana Pires Braga.
<em>Evolution of host repertoires and the diversification of
butterflies</em>.
PhD thesis, Stockholm University, Department of Zoology, 2019.
[ <a href="pub_bib.html#braga2019evolution">bib</a> |
<a href="http://urn.kb.se/resolve?urn=urn%3Anbn%3Ase%3Asu%3Adiva-163179">Url</a> |
<a href="http://www.diva-portal.org/smash/get/diva2:1271841/FULLTEXT01.pdf">Pdf</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="lunden2018automatic">34</a>]
</td>
<td class="bibtexitem">
Daniel Lundén, David Broman, Fredrik Ronquist, and Lawrence M Murray.
Automatic alignment of sequential Monte Carlo inference in
higher-order probabilistic programs.
<em>arXiv preprint arXiv:1812.07439</em>, 2018.
[ <a href="pub_bib.html#lunden2018automatic">bib</a> |
<a href="https://arxiv.org/abs/1812.07439">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="macklin2018general">35</a>]
</td>
<td class="bibtexitem">
James Macklin, Markus Englund, Falko Glöckler, Mikko Heikkinen, Jana
Hoffmann, Keith Newton, and Fredrick Ronquist.
General introduction to DINA.
<em>Biodiversity Information Science and Standards</em>, 2018.
[ <a href="pub_bib.html#macklin2018general">bib</a> |
<a href="https://doi.org/10.3897/biss.2.25646">DOI</a> |
<a href="https://biss.pensoft.net/article/25646">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="ronquist2018life">36</a>]
</td>
<td class="bibtexitem">
Fredrik Ronquist, Johan Nylander, Hege Vårdal, and José Luis
Nieves-Aldrey.
Life history of <i>Parnips</i> and the evolutionary origin of
gall wasps.
<em>Journal of Hymenoptera Research</em>, 65:91--110, 2018.
[ <a href="pub_bib.html#ronquist2018life">bib</a> |
<a href="https://doi.org/10.3897/jhr.65.24115">DOI</a> |
<a href="https://jhr.pensoft.net/articles.php?id=24115">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="hovmoller2017streckkodning">37</a>]
</td>
<td class="bibtexitem">
Rasmus Hovmöller, Mattias Forshage, and Fredrik Ronquist.
Streckkodning av den svenska floran och
faunan--förutsättningar och utmaningar.
<em>PM från Naturhistoriska riksmuseet 2017: 1. Naturhistoriska
riksmuseets småskriftserie</em>, 2017.
[ <a href="pub_bib.html#hovmoller2017streckkodning">bib</a> |
<a href="https://www.nrm.se/download/18.2a85cf3215e50a71056eac46/1511363009228/Streckkodningsrapport_slutversion_2017-11-21.pdf">Url</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="macklin2017dina">38</a>]
</td>
<td class="bibtexitem">
James Macklin, Falko Glöckler, Jana Hoffmann, Fredrik Ronquist, Stefan
Daume, and Elspeth Haston.
DINA: Open Source and Open Services-A Modern Approach for
Sustainable Natural History Collection Management Systems.
<em>Biodiversity Information Science and Standards</em>, 2017.
[ <a href="pub_bib.html#macklin2017dina">bib</a> |
<a href="https://doi.org/10.3897/tdwgproceedings.1.20216">DOI</a> |
<a href="https://biss.pensoft.net/article/20216/">Url</a> |
<a href="https://biss.pensoft.net/article/20216/download/pdf/">Pdf</a> ]
</td>
</tr>
</table><hr><p><em>This file was generated by
<a href="http://www.lri.fr/~filliatr/bibtex2html/">bibtex2html</a> 1.99.</em></p>
</body>
</html>