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inrptashkin/facets2n (press backspace or delete to remove)Hi, based on your vignette in README, the analysis included a matched normal along with unmatched BAMS to process the
tumor snp-pileup. If my samples do not have a matched normal, is it as simple as not ...
michelle-jahja
- Opened on Oct 7, 2024
- #33
For the --unmatched-normal-BAMS parameter, how do the inputs differ for the reference normals pileup compared to the
tumor pool normal pileup? I am using roughly 45 BAMs in my reference pool for the reference ...
julialouw17
- 2
- Opened on Sep 26, 2024
- #32
Hello,
I generated the normal snp and then the loess.txt using 47 normal bams successfully using:
/usr/local/lib/R/site-library/facets2n/extcode/snp-pileup-wrapper.R --output-prefix
/media/user/Seagate_Exome67_133/LIGUE/Exomes_67_133/FACETS/Tonly/standard_normals_cv3heme ...
iS4i4S
- 6
- Opened on Aug 5, 2021
- #25
1512474508https://github.com/rptashkin/facets2n/blob/8b163e2be965901b6f28865707c3011f9957080f/R/facets-procreads.R#L82
can first check for at least one unmatched normal before this block
rptashkin
- Opened on Jun 15, 2020
- #19
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