Regulatory Sequence Analysis Tools (RSAT)

This folder contains the code required to run a local version of the software suite Regulatory Sequence Analysis Tools (RSAT).

Contact: Jacques.van-Helden[AT]univ-amu.fr , rsat-contact[AT]list01.bio.ens.psl.eu

Authors: Jacques van Helden + the RSAT team.

Files and folders

Folders coming with the release

contrib software tools developed by collaborators, in C, requiring compilation.
doc documentation in various formats.
perl-scripts Perl scripts, which constitute most of the RSAT and NeAT code.
public_html Web interface (cgi + php scripts).
python-scripts Python scripts
ws_clients examples of Web services clients in different languages.

Folders created for management

app_sources download the code source of diverse applications (dependencies plus optional complementary software tools).
bin executable binaries (including the compiled C programs).
downloads this folder is created at RSAT initialisation. It serves to download the genome data from NCBI, Ensembl or other databases, which will serve to install organisms on RSAT.

Documentation