From 1cc6d4da107a343a762f1c8af72b28476944dee9 Mon Sep 17 00:00:00 2001 From: hujo91 Date: Tue, 1 Feb 2022 11:23:19 +0100 Subject: [PATCH] adds trimerization, cyclotrimerization & protein trimerization --- mop.obo | 89 ++++++++++++++++++++++++++++--------------- mop.owl | 114 +++++++++++++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 170 insertions(+), 33 deletions(-) diff --git a/mop.obo b/mop.obo index 155479e..a03b977 100644 --- a/mop.obo +++ b/mop.obo @@ -1,8 +1,9 @@ format-version: 1.2 -data-version: releases/2014-09-03 +data-version: releases/2022-02-01 synonymtypedef: FORMULA "FORMULA" synonymtypedef: IUPAC_NAME "IUPAC NAME" ontology: mop +property_value: http://purl.org/dc/elements/1.1/date "01:02:2022 11:15" xsd:string property_value: http://purl.org/dc/elements/1.1/description "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation." xsd:string property_value: http://purl.org/dc/elements/1.1/title "MOP" xsd:string property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/ @@ -30,6 +31,11 @@ id: CHEBI:18379 name: nitrile is_a: CHEBI:36357 ! polyatomic entity +[Term] +id: CHEBI:22221 +name: acyl group +is_a: CHEBI:33247 ! organic group + [Term] id: CHEBI:23367 name: molecular entity @@ -111,6 +117,11 @@ id: CHEBI:33246 name: inorganic group is_a: CHEBI:24433 ! group +[Term] +id: CHEBI:33247 +name: organic group +is_a: CHEBI:24433 ! group + [Term] id: CHEBI:33595 name: cyclic compound @@ -186,6 +197,11 @@ synonym: "isotellurocyanato" EXACT IUPAC_NAME [IUPAC:] synonym: "TeCN-" RELATED [IUPAC:] is_a: CHEBI:36823 ! pseudohalo groups +[Term] +id: CHEBI:37838 +name: carboacyl group +is_a: CHEBI:22221 ! acyl group + [Term] id: CHEBI:37997 name: homopolymer @@ -238,6 +254,11 @@ synonym: "NC-" RELATED [IUPAC:] xref: MSDchem:CN "MSDchem" is_a: CHEBI:36823 ! pseudohalo groups +[Term] +id: CHEBI:51100 +name: sulfonyl groups +is_a: CHEBI:24433 ! group + [Term] id: CHEBI:51142 name: amino groups @@ -251,6 +272,7 @@ is_a: CHEBI:24433 ! group [Term] id: CHEBI:51870 name: boryl group +is_a: CHEBI:24433 ! group is_a: CHEBI:33246 ! inorganic group [Term] @@ -329,16 +351,24 @@ name: acetylenic compound is_a: CHEBI:36357 ! polyatomic entity [Term] -id: CHEBI:51870 -name: boryl group -is_a: CHEBI:24433 +id: GO:0070206 +name: protein trimerization +namespace: biological_process +def: "The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits." [] +synonym: "protein trimer assembly" EXACT [] +synonym: "protein trimer biosynthesis" EXACT [] +synonym: "protein trimer biosynthetic process" EXACT [] +synonym: "protein trimer formation" EXACT [] +xref: GOC:hjd +is_a: MOP:0000715 ! trimerization +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl xsd:string [Term] id: MOP:0000000 name: borylation def: "Formation of a covalent bond between a substrate and a boryl group (-BR'R')." [https://orcid.org/0000-0001-5985-7429] is_a: MOP:0000801 ! formation of covalent bond with boron centre -relationship: BFO:0000057 CHEBI:51870 ! boryl group +relationship: BFO:0000057 CHEBI:51870 ! has_participant boryl group [Term] id: MOP:0000001 @@ -563,22 +593,7 @@ def: "Formation of a covalent bond between a substrate and a carboacyl group." [ synonym: "carboacylation" EXACT [] is_a: MOP:0000479 ! acylation is_a: MOP:0000800 ! formation of covalent bond with carbon centre -relationship: BFO:0000057 CHEBI:37838 - -[Term] -id: CHEBI:37838 -name: carboacyl group -is_a: CHEBI:22221 ! acyl group - -[Term] -id: CHEBI:22221 -name: acyl group -is_a: CHEBI:33247 ! organic group - -[Term] -id: CHEBI:33247 -name: organic group -is_a: CHEBI:24433 +relationship: BFO:0000057 CHEBI:37838 ! has_participant carboacyl group [Term] id: MOP:0000029 @@ -4156,8 +4171,8 @@ name: acylation def: "Formation of a covalent bond between a substrate and an acyl group." [RSC:xp] comment: you probably want "carboacylation", MOP:0000028, here synonym: "acylation" EXACT [] -is_a: MOP:0000800 ! formation of covalent bond with group -relationship: BFO:0000057 CHEBI:22221 +is_a: MOP:0000800 ! formation of covalent bond with carbon centre +relationship: BFO:0000057 CHEBI:22221 ! has_participant acyl group [Term] id: MOP:0000480 @@ -4631,13 +4646,8 @@ def: "Formation of a covalent bond between a substrate and a sulfonyl group." [R synonym: "sulfonylation" EXACT [] is_a: MOP:0000798 ! formation of covalent bond with sulfur centre intersection_of: MOP:0000798 ! formation of covalent bond with sulfur centre -intersection_of: BFO:0000057 CHEBI:51100 -relationship: BFO:0000057 CHEBI:51100 - -[Term] -id: CHEBI:51100 -name: sulfonyl groups -is_a: CHEBI:24433 +intersection_of: BFO:0000057 CHEBI:51100 ! has_participant sulfonyl groups +relationship: BFO:0000057 CHEBI:51100 ! has_participant sulfonyl groups [Term] id: MOP:0000540 @@ -6050,7 +6060,7 @@ relationship: BFO:0000078 CHEBI:33641 ! has participant ceasing to exist olefin [Term] id: MOP:0000713 name: acetylene reduction -def: "Hydrogenation of an acetylene to an olefin." +def: "Hydrogenation of an acetylene to an olefin." [] is_a: MOP:0000589 ! hydrogenation [Term] @@ -6064,6 +6074,23 @@ relationship: BFO:0000057 CHEBI:52214 ! has_participant ligand created_by: http://orcid.org/0000-0002-4378-6061 creation_date: 2021-11-03T09:13:45Z +[Term] +id: MOP:0000715 +name: trimerization +def: "The formation of a trimer from three molecular subunits." [https://en.wiktionary.org/wiki/trimerization] +is_a: MOP:0000543 ! molecular process +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-4378-6061 +property_value: http://purl.org/dc/elements/1.1/date 2022-02-01T09:40:48Z xsd:dateTime + +[Term] +id: MOP:0000716 +name: cyclotrimerization +def: "The formation of a trimer by cycloaddition of three unsaturated compounds (e.g. alkynes, alkenes, nitriles or mixtures thereof). A metal catalyst is usually required for this type of reaction." [https://doi.org/10.1002/anie.200700802] +is_a: MOP:0000562 ! cycloaddition +is_a: MOP:0000715 ! trimerization +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-4378-6061 +property_value: http://purl.org/dc/elements/1.1/date 2022-02-01T09:48:59Z xsd:dateTime + [Term] id: MOP:0000721 name: [3,3]-sigmatropic rearrangement diff --git a/mop.owl b/mop.owl index 201f3a4..bf7f961 100644 --- a/mop.owl +++ b/mop.owl @@ -12,7 +12,8 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + 01:02:2022 11:15 MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. MOP @@ -46,6 +47,14 @@ + + + + imported from + + + + @@ -70,6 +79,36 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -130,6 +169,14 @@ + + + + has_obo_namespace + + + + @@ -152,6 +199,12 @@ + + + + + + @@ -1259,6 +1312,24 @@ + + + + + The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits. + http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl + GOC:hjd + protein trimer assembly + protein trimer biosynthesis + protein trimer biosynthetic process + protein trimer formation + biological_process + GO:0070206 + protein trimerization + + + + @@ -15387,6 +15458,45 @@ + + + + + The formation of a trimer from three molecular subunits. + + 2022-02-01T09:40:48Z + MOP:0000715 + trimerization + + + + + The formation of a trimer from three molecular subunits. + https://en.wiktionary.org/wiki/trimerization + + + + + + + + + + The formation of a trimer by cycloaddition of three unsaturated compounds (e.g. alkynes, alkenes, nitriles or mixtures thereof). A metal catalyst is usually required for this type of reaction. + + 2022-02-01T09:48:59Z + MOP:0000716 + cyclotrimerization + + + + + The formation of a trimer by cycloaddition of three unsaturated compounds (e.g. alkynes, alkenes, nitriles or mixtures thereof). A metal catalyst is usually required for this type of reaction. + https://doi.org/10.1002/anie.200700802 + + + + @@ -67905,5 +68015,5 @@ - +