From b2a9b6eddccbc1e0830da337742837f9102da113 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philip=20Str=C3=B6mert?= Date: Wed, 11 May 2022 14:54:46 +0200 Subject: [PATCH 1/2] delete GO:0070206 from mop.owl and mop.obo --- mop.obo | 17 ++--------------- mop.owl | 22 ++-------------------- 2 files changed, 4 insertions(+), 35 deletions(-) diff --git a/mop.obo b/mop.obo index a03b977..0de4aac 100644 --- a/mop.obo +++ b/mop.obo @@ -1,9 +1,9 @@ format-version: 1.2 -data-version: releases/2022-02-01 +data-version: releases/2022-05-11 synonymtypedef: FORMULA "FORMULA" synonymtypedef: IUPAC_NAME "IUPAC NAME" ontology: mop -property_value: http://purl.org/dc/elements/1.1/date "01:02:2022 11:15" xsd:string +property_value: http://purl.org/dc/elements/1.1/date "11:05:2022 11:15" xsd:string property_value: http://purl.org/dc/elements/1.1/description "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation." xsd:string property_value: http://purl.org/dc/elements/1.1/title "MOP" xsd:string property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/ @@ -350,19 +350,6 @@ id: CHEBI:73474 name: acetylenic compound is_a: CHEBI:36357 ! polyatomic entity -[Term] -id: GO:0070206 -name: protein trimerization -namespace: biological_process -def: "The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits." [] -synonym: "protein trimer assembly" EXACT [] -synonym: "protein trimer biosynthesis" EXACT [] -synonym: "protein trimer biosynthetic process" EXACT [] -synonym: "protein trimer formation" EXACT [] -xref: GOC:hjd -is_a: MOP:0000715 ! trimerization -property_value: IAO:0000412 http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl xsd:string - [Term] id: MOP:0000000 name: borylation diff --git a/mop.owl b/mop.owl index bf7f961..f625b8c 100644 --- a/mop.owl +++ b/mop.owl @@ -12,8 +12,8 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - - 01:02:2022 11:15 + + 11:05:2022 11:15 MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation. MOP @@ -1312,24 +1312,6 @@ - - - - - The formation of a protein trimer, a macromolecular structure consisting of three noncovalently associated identical or nonidentical subunits. - http://purl.obolibrary.org/obo/go/releases/2022-01-13/go.owl - GOC:hjd - protein trimer assembly - protein trimer biosynthesis - protein trimer biosynthetic process - protein trimer formation - biological_process - GO:0070206 - protein trimerization - - - - From 3ee4605d416ec44d1bf946bb9b976ea82bf5995b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Philip=20Str=C3=B6mert?= Date: Tue, 17 May 2022 14:37:51 +0200 Subject: [PATCH 2/2] add editor note and links to the issues/PR --- mop.obo | 3 +++ mop.owl | 11 +++++++++++ 2 files changed, 14 insertions(+) diff --git a/mop.obo b/mop.obo index 0de4aac..6916c79 100644 --- a/mop.obo +++ b/mop.obo @@ -6068,6 +6068,9 @@ def: "The formation of a trimer from three molecular subunits." [https://en.wikt is_a: MOP:0000543 ! molecular process property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-4378-6061 property_value: http://purl.org/dc/elements/1.1/date 2022-02-01T09:40:48Z xsd:dateTime +property_value: IAO:0000116 "The GO class \"protein trimerization\" (https://purl.obolibrary.org/obo/GO_0070206) would actually be a subclass of \"trimerization\" according to the definition provided here. However, for the reason of not wanting to inject this subclassOf axiom into GO, we decided to not assert this in MOP as of yet. Further discussion is needed with the GO and/or OBO team to see how this GO class can be integrated." xsd:string +property_value: seeAlso https://github.com/rsc-ontologies/rxno/issues/45 +property_value: seeAlso "issuecomment-1124151946" [Term] id: MOP:0000716 diff --git a/mop.owl b/mop.owl index f625b8c..8a795ca 100644 --- a/mop.owl +++ b/mop.owl @@ -41,6 +41,14 @@ + + + + editor note + + + + @@ -15445,10 +15453,13 @@ The formation of a trimer from three molecular subunits. + The GO class "protein trimerization" (https://purl.obolibrary.org/obo/GO_0070206) would actually be a subclass of "trimerization" according to the definition provided here. However, for the reason of not wanting to inject this subclassOf axiom into GO, we decided to not assert this in MOP as of yet. Further discussion is needed with the GO and/or OBO team to see how this GO class can be integrated. 2022-02-01T09:40:48Z MOP:0000715 trimerization + +