========
- Python 2.7+
- Biopython
- urllib2
Downloads gene expression raw data from NCBI's Gene Expression Omnibus (GEO) Script runs in command line and takes two arguments:
- search query
- number of results to download
$ python fetchgeo.py 'ovarian cancer' 20
Each result entries are downloaded & stored in a separately labelled folder containing:
- Raw Data
- SOFT file
- Text file containing detailed metadata for each study