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software.qmd
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software.qmd
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## BIDS
not directly a software, but a specification: [the BIDS specification](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/03-electroencephalography.html)
It might be helpful as a manual to get an overview what should be there and what shouldnt.
## mne-python
MNE Python is a general EEG processing, analysis and visualization toolbox. It will sufficice for 99% of your EEG analyses.
## mne-bids-pipeline
BIDS is a standardized format (mostly in terms of folder-structures), to save EEG (and other imaging) dataformats. On top of BIDS, one can relatively easily specify an MNE-pipeline using the `MNE-BIDS-Pipeline` package.
[get started here](https://mne.tools/mne-bids-pipeline/1.4/getting_started/install.html)
We recommend strongly to try it out in a tutorial and use it for your semester project data analysis!
## IClabel
a cool tool to automatically classify artefactual independent components is ICLabel. You can use it here: https://github.com/mne-tools/mne-icalabel
::: {.callout-warning}
I havent tested iclabel with mne-bids-pipeline, it should be compatible though.
:::