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Cant install bio_embeddings in colab #236
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I am trying to use PhageRBP detect and facing the same issue! |
Hi! I got the same error trying to use the SeqVec in colab !pip3 install -U pip > /dev/null error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. note: This error originates from a subprocess, and is likely not a problem with pip. × pip subprocess to install build dependencies did not run successfully. note: This error originates from a subprocess, and is likely not a problem with pip. Any suggestion on how I can fix it? Thanks |
Hi, I have got the same error How can I fix it? Thanks in advance |
Hi, I encountered the same error, but I found a solution that worked for me. As a Windows user, I used a Ubuntu environment via WSL. I installed Python version 3.8 and then ran pip install bio-embedding[all]. I couldn't get it to work from Colab, so I ended up using Jupyter Notebook instead. This setup allowed everything to work properly. Hope this helps! Best, |
I am trying to use SeqVec in colab but the following installation commands probably dont work anymore (maybe is a dependencies version think).
i use these commands to install:
!pip3 install -U pip > /dev/null
!pip3 install -U bio_embeddings[all] > /dev/null
and i get this
**WARNING: bio-embeddings 0.1.3 does not provide the extra 'all'
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.**
Is there a colab example that works these days?
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