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Can't install well to run bio_embed #246

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Lsz-20 opened this issue Jul 10, 2024 · 1 comment
Open

Can't install well to run bio_embed #246

Lsz-20 opened this issue Jul 10, 2024 · 1 comment

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@Lsz-20
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Lsz-20 commented Jul 10, 2024 •
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Hello, I have installed bio_embeddings with 'pip install bio_embeddings-0.2.2-py3-none-any.whl', and when i try to run the notebooks/embed_fasta_sequences.ipynb,it shows me:
ImportError: cannot import name 'SeqVecEmbedder' from 'bio_embeddings.embed' (/opt/anaconda3/envs/bioembeddings/lib/python3.8/site-packages/bio_embeddings/embed/init.py)
How can i solve this problem？Thanks.
@Zaozzz
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Zaozzz commented Aug 19, 2024 •
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Maybe try to use "from bio_embeddings.embed.seqvec_embedder import SeqVecEmbedder"?

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@Lsz-20 @Zaozzz