SAIGE installation error

[Sirtx]

Hello,

I'm trying to install SAGE to an HPC environment, and all preparation steps seem to go well but the SAIGE's install command is always unsuccessful, and results in following error:

 (base) [user@HPC software]$ R CMD INSTALL SAIGE
* installing to library ‘/homes/user/R/x86_64-pc-linux-gnu-library/4.1’
* installing *source* package ‘SAIGE’ ...
** using staged installation
Usage: cget [OPTIONS] COMMAND [ARGS]...

Error: No such command "ignore".
ERROR: configuration failed for package ‘SAIGE’
* removing ‘/homes/user/R/x86_64-pc-linux-gnu-library/4.1/SAIGE’

I don't seem to find anything similar from the Github issue, or by Googling, so doesanyone know what package/software the error with "ignore" could be?

[kscott-1]

It most likely has to do with cget and the following line :

SAIGE/configure

Line 21 in 1fa4a0b

cget ignore --prefix thirdParty/cget xz