From 246542644e96ba9bcf0c26c3466323006d211fd1 Mon Sep 17 00:00:00 2001 From: Guoying Qi Date: Fri, 1 Dec 2023 15:38:58 +0000 Subject: [PATCH] test on 8 cores large runner --- .github/workflows/ci.yml | 4 ++-- assets/test_github.yaml | 6 +++--- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1179da08..fed3beed 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -21,7 +21,7 @@ jobs: name: Run pipeline with test data # Only run on push if this is the nf-core dev branch (merged PRs) if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'sanger-tol/genomeassembly') }}" - runs-on: self-hosted + runs-on: ubuntu2204-8c strategy: matrix: NXF_VER: @@ -42,4 +42,4 @@ jobs: - name: Run pipeline with test data run: | - nextflow run ${GITHUB_WORKSPACE} -profile test_github,docker -c conf/hifiasm_test.config --organelles_on --outdir ./results + nextflow run ${GITHUB_WORKSPACE} -profile test_github,docker --outdir ./results diff --git a/assets/test_github.yaml b/assets/test_github.yaml index c769efc9..bc3af9c6 100644 --- a/assets/test_github.yaml +++ b/assets/test_github.yaml @@ -1,13 +1,13 @@ dataset: id: baUndUnlc1 illumina_10X: - reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/ + reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/10x/ pacbio: reads: - - reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta + - reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/pacbio/fasta/HiFi.reads.fasta HiC: reads: - - reads: /home/ubuntu/github/actions-runner/_work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram + - reads: /home/runner/work/genomeassembly/genomeassembly/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram hic_motif: GATC,GANTC,CTNAG,TTAA busco: lineage: bacteria_odb10