diff --git a/docs/output.md b/docs/output.md
index 1da8d5c..f753555 100644
--- a/docs/output.md
+++ b/docs/output.md
@@ -9,7 +9,7 @@ Optionally, if Illumina 10X data is provided, the purged contigs and haplotigs c
In case of a diploid genome when HiFi and HiC data is coming from the same individual addtionally hifiasm
can be run in HiC mode to produce a phased assembly. In that case the produced haplotypes are not purged but scaffolded up directly with YaHS
.
-Optionally, the organelles assembly can be triggered. The mitochondrion and (if relevant) plastid sequences are produced using MitoHiFi
and OATK
.
+Optionally, the organelles assembly can be triggered. The mitochondrion and (if relevant) plastid sequences are produced using MitoHiFi
and OATK
.
The directories listed below will be created in the --outdir
directory after the pipeline has finished. All paths are relative to the top-level --outdir
directory.