From 951a321dfcdd39fa183d1af7dba5ef0abf65f3ec Mon Sep 17 00:00:00 2001 From: Ksenia Krasheninnikova Date: Thu, 5 Sep 2024 15:33:32 +0100 Subject: [PATCH] Prettier fix --- docs/output.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/output.md b/docs/output.md index 1da8d5c..f753555 100644 --- a/docs/output.md +++ b/docs/output.md @@ -9,7 +9,7 @@ Optionally, if Illumina 10X data is provided, the purged contigs and haplotigs c In case of a diploid genome when HiFi and HiC data is coming from the same individual addtionally hifiasm can be run in HiC mode to produce a phased assembly. In that case the produced haplotypes are not purged but scaffolded up directly with YaHS. -Optionally, the organelles assembly can be triggered. The mitochondrion and (if relevant) plastid sequences are produced using MitoHiFi and OATK. +Optionally, the organelles assembly can be triggered. The mitochondrion and (if relevant) plastid sequences are produced using MitoHiFi and OATK. The directories listed below will be created in the --outdir directory after the pipeline has finished. All paths are relative to the top-level --outdir directory.