diff --git a/content/mypubs.bib b/content/mypubs.bib index cd3767724..8e8b3fbd1 100644 --- a/content/mypubs.bib +++ b/content/mypubs.bib @@ -1,3 +1,52 @@ +@InProceedings{Sinha2024b, + author = {Sinha, Ankur and Ledda, Filippo and Cantarelli, Matteo and Dura-Burnal, Salvador and Silver, Angus and Gleeson, Padraig}, + booktitle = {32nd Annual Computational Neuroscience Meeting: CNS*2023}, + date = {2024}, + year = {2024}, + title = {Facilitating the development of data-driven, standardised cortical models in the cloud using NeuroML and Open Source Brain v2}, + doi = {10.1007/s10827-024-00871-5}, + url = {https://doi.org/10.1007/s10827-024-00871-5}, + issn = {1573-6873}, + journaltitle = {Journal of Computational Neuroscience}, +} +@InProceedings{Sinha2024c, + author = {Sinha, Ankur and Mäki-Marttunen, Tuomo and Obermayer, Klaus and Steuber, Volker and Metzner, Christoph}, + booktitle = {32nd Annual Computational Neuroscience Meeting: CNS*2023}, + date = {2024}, + year = {2024}, + title = {Effects of Ih channel modulation on excitability and dendritic integration in layer V pyramidal cells in health and in schizophrenia}, + doi = {10.1007/s10827-024-00871-5}, + url = {https://doi.org/10.1007/s10827-024-00871-5}, + issn = {1573-6873}, + journaltitle = {Journal of Computational Neuroscience}, +} + +@InProceedings{Sinha2024d, + author = {Gleeson, Padraig and Crook, Sharon and Sinha, Ankur and Cohen, Jonathan}, + booktitle = {32nd Annual Computational Neuroscience Meeting: CNS*2023}, + date = {2024}, + year = {2024}, + title = {Integrating model development across computational neuroscience, cognitive science and machine learning using the Model Description Format—MDF}, + doi = {10.1007/s10827-024-00871-5}, + url = {https://doi.org/10.1007/s10827-024-00871-5}, + issn = {1573-6873}, + journaltitle = {Journal of Computational Neuroscience}, +} +@Article{Sinha2023a, + author = {Sinha, Ankur and Metzner, Christoph and Davey, Neil and Adams, Rod and Schmuker, Michael and Steuber, Volker}, + date = {2023}, + year = {2023}, + journal = {Journal of Computational Neuroscience}, + journaltitle = {Journal of Computational Neuroscience}, + title = {Homeostatic structural and synaptic plasticity both contribute to the repair of peripherally-lesioned balanced networks}, + doi = {10.1007/s10827-022-00841-9}, + issn = {1573-6873}, + number = {1}, + pages = {3--101}, + url = {https://doi.org/10.1007/s10827-022-00841-9}, + volume = {51}, +} + @Article{Shaikh2022, author = {Bilal Shaikh and Lucian P Smith and Dan Vasilescu and Gnaneswara Marupilla and Michael Wilson and Eran Agmon and Henry Agnew and Steven S Andrews and Azraf Anwar and Moritz E Beber and Frank T Bergmann and David Brooks and Lutz Brusch and Laurence Calzone and Kiri Choi and Joshua Cooper and John Detloff and Brian Drawert and Michel Dumontier and G~Bard Ermentrout and James~R Faeder and Andrew~P Freiburger and Fabian Fröhlich and Akira Funahashi and Alan Garny and John~H Gennari and Padraig Gleeson and Anne Goelzer and Zachary Haiman and Jan Hasenauer and Joseph~L Hellerstein and Henning Hermjakob and Stefan Hoops and Jon~C Ison and Diego Jahn and Henry~V Jakubowski and Ryann Jordan and Mat{\'{u}}{\v{s}} Kala{\v{s}} and Matthias König and Wolfram Liebermeister and Rahuman~S Malik Sheriff and Synchon Mandal and Robert McDougal and J~Kyle Medley and Pedro Mendes and Robert Müller and Chris~J Myers and Aurelien Naldi and Tung V N Nguyen and David~P Nickerson and Brett~G Olivier and Drashti Patoliya and Loïc Paulev{\'{e}} and Linda~R Petzold and Ankita Priya and Anand~K Rampadarath and Johann M Rohwer and Ali~S Saglam and Dilawar Singh and Ankur Sinha and Jacky Snoep and Hugh Sorby and Ryan Spangler and Jörn Starru{\ss} and Payton~J Thomas and David van Niekerk and Daniel Weindl and Fengkai Zhang and Anna Zhukova and Arthur~P Goldberg and James~C Schaff and Michael~L Blinov and Herbert~M Sauro and Ion~I Moraru and Jonathan~R Karr}, date = {2022-05}, @@ -25,104 +74,6 @@ @Article{Sinha2021d unique-id = {WOS:000736099800084}, } -@Misc{Gleeson2021, - author = {Gleeson, Padraig and Cantarelli, Matteo and Marin, Boris and Sinha, Ankur and Earnshaw, Matt and Quintana, Adrian and Piasini, Eugenio}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/org.neuroml.model: v1.8.1}, - doi = {10.5281/zenodo.5788683}, - url = {https://doi.org/10.5281/zenodo.5788683}, - version = {v1.8.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021a, - author = {Gleeson, Padraig and Sinha, Ankur and Cantarelli, Matteo}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/org.neuroml.model.injectingplugin: v1.8.1}, - doi = {10.5281/zenodo.5788681}, - url = {https://doi.org/10.5281/zenodo.5788681}, - version = {v1.8.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021b, - author = {Gleeson, Padraig and Sinha, Ankur and Cantarelli, Matteo and Quintana, Adrian and Marin, Boris}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/org.neuroml.import: v1.8.1}, - doi = {10.5281/zenodo.5788684}, - url = {https://doi.org/10.5281/zenodo.5788684}, - version = {v1.8.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021c, - author = {Gleeson, Padraig and Sinha, Ankur and Cantarelli, Matteo}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/org.neuroml1.model: v1.8.1}, - doi = {10.5281/zenodo.5788682}, - url = {https://doi.org/10.5281/zenodo.5788682}, - version = {v1.8.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021d, - author = {Gleeson, Padraig and Sinha, Ankur and Gerkin, Richard C. and Stanislovas, Rokas and Lung, David and Marin, Boris and Chintaluri, Chaitanya and Watts, Mark and 34383c and Ecker, András and Rieke, Johannes}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/pyNeuroML: v0.5.20}, - doi = {10.5281/zenodo.5788658}, - url = {https://doi.org/10.5281/zenodo.5788658}, - version = {v0.5.20}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021e, - author = {Gleeson, Padraig and Vella, Mike and Sinha, Ankur and Barnes, Chris and Mattioni, Michele and Davison, Andrew and Givon, Lev E. and BK and Jefferis, Gregory and Stimberg, Marcel and Iizuka, Sho and Gerhard, Stephan and kumar, Kapil}, - date = {2021-12}, - year = {2021}, - title = {NeuralEnsemble/libNeuroML: Release v0.3.1}, - doi = {10.5281/zenodo.5788625}, - url = {https://doi.org/10.5281/zenodo.5788625}, - version = {v0.3.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021f, - author = {Gleeson, Padraig and Cannon, Robert and Cantarelli, Matteo and Sinha, Ankur and Osborne, Hugh and Quintana, Adrian and Marin, Boris and Krewer, Finn}, - year = {2021}, - title = {LEMS/jLEMS: v0.10.6}, - doi = {10.5281/zenodo.5788680}, - url = {https://doi.org/10.5281/zenodo.5788680}, - version = {v0.10.6}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021g, - author = {Gleeson, Padraig and Sinha, Ankur and Jarvis, Russell and Krewer, Finn and Quintana, Adrian and Marin, Boris and Piasini, Eugenio and kumar, Kapil and Singh, Dilawar and Idili, Giovanni and Geit, Werner Van}, - date = {2021-12}, - year = {2021}, - title = {NeuroML/jNeuroML: v0.11.1}, - doi = {10.5281/zenodo.5788691}, - url = {https://doi.org/10.5281/zenodo.5788691}, - version = {v0.11.1}, - publisher = {Zenodo}, -} - -@Misc{Gleeson2021h, - author = {Gleeson, Padraig and Cannon, Robert and Sinha, Ankur}, - date = {2021-12}, - year = {2021}, - title = {LEMS/LEMS: v0.7.6}, - doi = {10.5281/zenodo.5788686}, - url = {https://doi.org/10.5281/zenodo.5788686}, - version = {v0.7.6}, - publisher = {Zenodo}, -} - @Misc{Sinha2021, author = {Sinha, Ankur and Metzner, Christoph and Davey, Neil and Adams, Roderick and Schmuker, Micheal and Steuber, Volker}, date = {2021-04}, diff --git a/voidy-bootstrap b/voidy-bootstrap index 4ce74ee60..356a311f0 160000 --- a/voidy-bootstrap +++ b/voidy-bootstrap @@ -1 +1 @@ -Subproject commit 4ce74ee606fb3bd280a5000c8248b890d0135262 +Subproject commit 356a311f09fe14c435e9eae6cb0b52775c0ba7a4