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python2 run_sate.py error #40

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1457634627 opened this issue Feb 7, 2021 · 1 comment
Open

python2 run_sate.py error #40

1457634627 opened this issue Feb 7, 2021 · 1 comment

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@1457634627
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Traceback (most recent call last):
File "run_sate.py", line 27, in
from sate.mainsate import sate_main
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/mainsate.py", line 37, in
from sate.satejob import *
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/satejob.py", line 34, in
from sate.treeholder import TreeHolder, resolve_polytomies
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/treeholder.py", line 26, in
from sate.tree import PhylogeneticTree
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/tree.py", line 25, in
from dendropy import convert_node_to_root_polytomy
ImportError: cannot import name convert_node_to_root_polytomy

How to solve this problem

@mtholder
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Hi, I think that this issue arises from dependency on old behavior in the DendroPy package. Possible solutions would include installing an old version of DendroPy or the suggestions in this issue: smirarab/sepp#13

I hope that helps,
Mark

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