.gitlab-ci.yml

image: images.sbgenomics.com/marko_trifunovic/sbshinymodules-ci-docker:latest

stages:
  - build           # Build the R package binaries
  - document        # Generate package documentation using 'roxygen2'
  - check           # Run various checks (linting, coverage) on the codebase
  - deploy          # Deploy the package site using pkgdown

buildbinary:
  stage: build
  script:
    - R -e 'devtools::build(binary = TRUE, vignettes = FALSE)'

documentation:
  stage: document
  script:
    - R -e 'devtools::document()'

lintr:
  stage: check
  script:
    # redirect lintr stdout and stderr to file
    - R -e "install.packages('lintr')"
    - CI="" Rscript -e "lintr::lint_package()" &> lint_output.txt
    # fail if file is not empty
    - if [ -s "lint_output.txt" ]; then exit 1; fi
  artifacts:
    when: on_failure
    paths:
      - lint_output.txt

pages:
  stage: deploy
  script:
  - apt-get update && apt-get install -y pandoc
  - R -e 'devtools::build(binary = TRUE, vignettes = FALSE)'
  - R -e "install.packages('pkgdown')"
  - R -e "pkgdown::build_site(examples = FALSE)"
  artifacts:
    paths:
    - public