fixing ci pipeline for python3.9 and python3.13 #559
Workflow file for this run
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| name: CI | |
| on: [push, pull_request] | |
| jobs: | |
| build-Linux: | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get --no-install-recommends install \ | |
| catch2 \ | |
| libfreetype6-dev \ | |
| libglew-dev \ | |
| libglm-dev \ | |
| libmsgpack-dev \ | |
| libnetcdf-dev \ | |
| libpng-dev \ | |
| libxml2-dev | |
| - name: Install collada2gltf | |
| run: | | |
| wget -nv https://anaconda.org/schrodinger/collada2gltf/2.1.4/download/linux-64/collada2gltf-2.1.4-h6bb024c_0.tar.bz2 | |
| sudo tar xf collada2gltf-*.tar.bz2 -C / bin/collada2gltf | |
| - name: Get additional sources | |
| run: | | |
| git clone --depth 1 https://github.com/rcsb/mmtf-cpp.git | |
| cp -R mmtf-cpp/include/mmtf* include/ | |
| - name: Build | |
| run: | | |
| pip install --upgrade pip | |
| pip install -v --config-settings testing=True '.[dev]' | |
| env: | |
| DEBUG: 1 | |
| - name: Test | |
| run: | | |
| pymol -ckqy testing/testing.py --run all | |
| build-Windows: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| env: | |
| CONDA_ROOT: ${{github.workspace}}\..\tmp\miniforge | |
| CONDA_ENV_NAME: "testing_env" | |
| CONDA_PREFIX: ${{github.workspace}}\..\tmp\miniforge\envs\testing_env | |
| MINIFORGE_EXEC: ${{github.workspace}}\..\tmp\miniforge.exe | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Miniforge | |
| run: | | |
| if (-Not (Test-Path -Path $env:CONDA_ROOT)) { | |
| New-Item -ItemType Directory -Path $env:CONDA_ROOT | |
| } | |
| Invoke-WebRequest -Uri https://github.com/conda-forge/miniforge/releases/download/24.11.0-0/Miniforge3-24.11.0-0-Windows-x86_64.exe -OutFile $env:MINIFORGE_EXEC | |
| Start-Process -Wait -FilePath $env:MINIFORGE_EXEC -ArgumentList "/S", "/D=$env:CONDA_ROOT" | |
| - name: Add conda to PATH | |
| run: | | |
| echo "$env:CONDA_ROOT" | Out-File -Append -FilePath $env:GITHUB_PATH | |
| echo "$env:CONDA_ROOT\Scripts" | Out-File -Append -FilePath $env:GITHUB_PATH | |
| - name: Set up Miniforge | |
| run: | | |
| conda create -n $env:CONDA_ENV_NAME python=${{ matrix.python-version }} -y | |
| activate $env:CONDA_ENV_NAME | |
| conda install -y -c conda-forge -c schrodinger ` | |
| libpng ` | |
| freetype ` | |
| glew ` | |
| libxml2 ` | |
| catch2=2.13.3 ` | |
| glm ` | |
| libnetcdf ` | |
| collada2gltf ` | |
| libffi ` | |
| cxx-compiler | |
| conda info | |
| - name: Get additional sources | |
| run: | | |
| git clone --depth 1 https://github.com/rcsb/mmtf-cpp.git | |
| Copy-Item -Recurse -Path mmtf-cpp/include/mmtf\* -Destination "$env:CONDA_PREFIX\Library\include" | |
| git clone --depth 1 --single-branch --branch cpp_master https://github.com/msgpack/msgpack-c.git | |
| Copy-Item -Recurse -Path msgpack-c/include/msgpack\* -Destination "$env:CONDA_PREFIX\Library\include" | |
| dir mmtf-cpp/include/mmtf | |
| dir msgpack-c/include/msgpack | |
| dir "$env:CONDA_ROOT\envs\$env:CONDA_ENV_NAME\Library\include" | |
| - name: Build PyMOL | |
| run: | | |
| activate $env:CONDA_ENV_NAME | |
| python -m pip install -v --config-settings testing=True .[dev] | |
| - name: Test | |
| run: | | |
| activate $env:CONDA_ENV_NAME | |
| pymol -ckqy testing\testing.py --run all | |
| build-MacOS: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| env: | |
| CONDA_ROOT: "/tmp/miniforge" | |
| CONDA_ENV_NAME: "testing_env" | |
| steps: | |
| - uses: actions/[email protected] | |
| - name: Download Miniforge | |
| run: | | |
| curl -L -o $CONDA_ROOT.sh https://github.com/conda-forge/miniforge/releases/download/24.11.0-0/Miniforge3-MacOSX-x86_64.sh | |
| bash $CONDA_ROOT.sh -b -p $CONDA_ROOT | |
| - name: Add conda to PATH | |
| run: | | |
| echo "${CONDA_ROOT}/bin" >> "$GITHUB_PATH" | |
| - name: Set up Miniforge | |
| run: | | |
| conda create -n $CONDA_ENV_NAME python=${{ matrix.python-version }} | |
| source activate $CONDA_ENV_NAME | |
| conda install -y -c conda-forge -c schrodinger \ | |
| libpng \ | |
| freetype \ | |
| glew \ | |
| libxml2 \ | |
| catch2=2.13.3 \ | |
| glm \ | |
| libnetcdf \ | |
| collada2gltf | |
| conda info | |
| - name: Get additional sources | |
| run: | | |
| source activate $CONDA_ENV_NAME | |
| git clone --depth 1 https://github.com/rcsb/mmtf-cpp.git | |
| cp -R mmtf-cpp/include/mmtf* ${CONDA_PREFIX}/include/ | |
| git clone --depth 1 --single-branch --branch cpp_master https://github.com/msgpack/msgpack-c.git | |
| cp -R msgpack-c/include/msgpack* ${CONDA_PREFIX}/include/ | |
| - name: Build PyMOL | |
| run: | | |
| source activate $CONDA_ENV_NAME | |
| export MACOSX_DEPLOYMENT_TARGET=12.0 | |
| pip install -v --config-settings testing=True '.[dev]' | |
| - name: Test | |
| run: | | |
| source activate $CONDA_ENV_NAME | |
| pymol -ckqy testing/testing.py --run all | |