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Merge pull request #1222 from CoffeaTeam/pre-commit-ci-update-config #5572

Merge pull request #1222 from CoffeaTeam/pre-commit-ci-update-config

Merge pull request #1222 from CoffeaTeam/pre-commit-ci-update-config #5572

Workflow file for this run

name: CI/CD
on:
push:
branches:
- master
- backports-v0.7.x
- backports-v0.6.x
tags:
- v*.*.*
pull_request:
branches:
- master
- backports-v0.7.x
- backports-v0.6.x
# Run daily at 0:01 UTC
schedule:
- cron: '1 0 * * *'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
pre-commit:
name: pre-commit
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.13"
- uses: pre-commit/[email protected]
with:
extra_args: --hook-stage manual --all-files
test:
runs-on: ${{ matrix.os }}
needs: pre-commit
strategy:
matrix:
os: [ubuntu-latest, macOS-latest, windows-latest]
java-version: [17]
java-distribution: ["corretto"]
python-version: ["3.9", "3.12"]
name: test coffea (${{ matrix.os }}) - python ${{ matrix.python-version }}, JDK${{ matrix.java-version }}
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Set up JDK ${{ matrix.java-distribution }}/${{ matrix.java-version }}
uses: actions/setup-java@v4
with:
java-version: ${{ matrix.java-version }}
distribution: ${{ matrix.java-distribution }}
- name: Set python test settings
run: |
echo "INSTALL_EXTRAS='[dev,parsl,dask]'" >> $GITHUB_ENV
- name: Install uv
run: python -m pip install --upgrade uv
- name: Install dependencies (Linux)
if: matrix.os == 'ubuntu-latest'
run: |
uv pip install --system --upgrade pip setuptools wheel
# mltool installs
# c.f. https://github.com/astral-sh/uv/issues/3437
python -m pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
uv pip install --system xgboost
uv pip install --system 'tritonclient[grpc,http]!=2.41.0'
# install checked out coffea
uv pip install --system -q '.[dev,parsl,dask,spark]' --upgrade
uv pip list --system
java -version
- name: Install dependencies (MacOS)
if: matrix.os == 'macOS-latest'
run: |
uv pip install --system --upgrade pip setuptools wheel
# mltool installs
# c.f. https://github.com/astral-sh/uv/issues/3437
python -m pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
uv pip install --system xgboost
# install checked out coffea
uv pip install --system -q '.[dev,dask,spark]' --upgrade
uv pip list --system
java -version
- name: Install dependencies (Windows)
if: matrix.os == 'windows-latest'
run: |
uv pip install --system --upgrade pip setuptools wheel
# mltool installs
# c.f. https://github.com/astral-sh/uv/issues/3437
python -m pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
uv pip install --system xgboost
# install checked out coffea
uv pip install --system -q '.[dev,dask]' 'numpy<2' --upgrade
uv pip list --system
java -version
- name: Start triton server with example model
if: matrix.os == 'ubuntu-latest'
run: |
docker run -d --rm -p 8000:8000 -p 8001:8001 -p 8002:8002 -v ${{ github.workspace }}/tests/samples/triton_models_test:/models nvcr.io/nvidia/tritonserver:23.04-pyt-python-py3 tritonserver --model-repository=/models
- name: Test with pytest
run: |
python -m pytest --cov-report=xml --cov=coffea --deselect=test_taskvine
- name: Upload codecov
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12
uses: codecov/codecov-action@v5
- name: Install graphviz
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12
uses: ts-graphviz/setup-graphviz@v2
- name: Install pandoc
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12
uses: r-lib/actions/setup-pandoc@v2
- name: Build documentation
if: matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12
run: |
cd docs && make html
touch build/html/.nojekyll
# - name: Deploy documentation
# if: github.event_name == 'push' && matrix.os == 'ubuntu-latest' && matrix.python-version == 3.12
# uses: crazy-max/ghaction-github-pages@v4
# with:
# target_branch: gh-pages
# build_dir: docs/build/html
# env:
# GH_PAT: ${{ secrets.GITHUB_OAUTH }}
test-vine:
runs-on: ubuntu-latest
needs: pre-commit
strategy:
matrix:
python-version: ["3.11"]
name: test coffea-taskvine
steps:
- uses: actions/checkout@v4
- name: Set up Conda
uses: conda-incubator/setup-miniconda@v3
env:
ACTIONS_ALLOW_UNSECURE_COMMANDS: true
with:
auto-update-conda: true
python-version: ${{ matrix.python-version }}
channels: conda-forge
- name: Construct conda environment
shell: bash -l {0}
run: |
conda create --yes --prefix ./coffea-conda-test-env -c conda-forge python=${{ matrix.python-version }} ndcctools uv
conda activate ./coffea-conda-test-env
uv pip install --system .
uv pip install --system pytest
- name: Test with pytest
run: |
conda run --prefix ./coffea-conda-test-env pytest tests/test_taskvine.py
# testskyhookjob:
# runs-on: ubuntu-latest
# needs: pre-commit
# name: test coffea-skyhook-job
#
# steps:
# - uses: actions/checkout@3
# - name: Test Coffea Skyhook Bindings
# shell: bash -l {0}
# run: |
# docker build -t coffea-skyhook-test \
# --file docker/skyhook/Dockerfile \
# .
# docker run \
# -v $(pwd):/w \
# -w /w \
# -e IS_CI=true \
# --privileged \
# coffea-skyhook-test \
# ./docker/skyhook/script.sh
release:
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
runs-on: ubuntu-latest
needs: [test, test-vine]
permissions:
id-token: write
attestations: write
contents: read
strategy:
matrix:
python-version: ["3.12"]
name: deploy release
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Build package for PyPI
run: |
pipx run hatch build -t sdist -t wheel
- name: Verify the distribution
run: pipx run twine check --strict dist/*
- name: Generate artifact attestation for sdist and wheel
uses: actions/attest-build-provenance@ef244123eb79f2f7a7e75d99086184180e6d0018 # v1.4.4
with:
subject-path: "dist/coffea-*"
- name: Publish package to PyPI
uses: pypa/[email protected]
with:
user: __token__
password: ${{ secrets.PYPI_TOKEN }}
pass:
needs: [test, test-vine]
runs-on: ubuntu-latest
steps:
- run: echo "All jobs passed"