From 880a3a762bc680d0d4ab07175773278ef92e59f8 Mon Sep 17 00:00:00 2001 From: Danila Bredikhin Date: Fri, 8 Oct 2021 18:20:54 +0200 Subject: [PATCH] Update release notes for v0.1.1 --- docs/source/changelog.rst | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) diff --git a/docs/source/changelog.rst b/docs/source/changelog.rst index 0025402..b8c3efc 100644 --- a/docs/source/changelog.rst +++ b/docs/source/changelog.rst @@ -15,19 +15,13 @@ v0.1.1 ``MuData`` is now provided `as a separate package `_. Since this release, ``mudata`` is a hard dependency of ``muon``. Making the codebase more modular, this will also help developing tools around ``MuData`` that do not depend on ``scanpy`` or ``muon``. -* Fixes: +We fixed a few things including reading ``.h5mu`` files in backed mode when modalities have ``.raw`` attributes (this is live in the ``mudata`` library), ``SNF`` functionality (:func:`muon.tl.snf`) and colouring plots by ``var_names`` that are present in ``.raw`` but not in the root ``AnnData`` object. - * ``[mudata]`` Fix reading ``.h5mu`` files in backed mode when modalities have ``.raw`` attributes. - - * Fix colouring plots by ``var_names`` that are present in ``.raw`` but not in the root ``AnnData`` object. - -* New features: - - * ATAC module +We also introduced some new features for the ATAC module including: - * Handle fragments files with barcodes different than ``obs_names``. + * handling fragments files with barcodes different than ``obs_names`` and - * Support ``atac_peak_annotation.tsv`` files produced by Cell Ranger ARC 2.0.0. + * supporting ``atac_peak_annotation.tsv`` files produced by Cell Ranger ARC 2.0.0. v0.1.0 ------