From ae15b5001c38cd75730714e91305381e5ecfe581 Mon Sep 17 00:00:00 2001
From: Danila Bredikhin <danila.bredikhin@embl.de>
Date: Wed, 7 Jun 2023 13:03:45 +0400
Subject: [PATCH] v0.1.4

- Bump version
- Add changelog
- Fix tests for new AnnData dtype behaviour
---
 docs/source/changelog.rst  | 18 ++++++++++++++++++
 muon/__init__.py           |  2 +-
 tests/test_atac_preproc.py |  6 +++---
 3 files changed, 22 insertions(+), 4 deletions(-)

diff --git a/docs/source/changelog.rst b/docs/source/changelog.rst
index 4218da3..0d55dbf 100644
--- a/docs/source/changelog.rst
+++ b/docs/source/changelog.rst
@@ -9,6 +9,24 @@ Release notes
 
    *
 
+v0.1.4
+------
+
+This release comes with improvements and fixes:
+
+* :func:`muon.pp.intersect_obs` now works for modalities that have no ``.X``
+
+* :func:`muon.pl.embedding` now saves the colour palette in ``.uns``
+
+* :func:`muon.atac.pl.fragment_histogram` and :func:`muon.pl.histogram` now have save/show arguments
+
+* :func:`muon.atac.tl.count_fragments_features` now has a ``stranded`` argument
+
+* :func:`muon.atac.tl.nucleosome_signal` now works on more ``pysam`` setups
+
+* support for numpy 1.24 and newer scanpy versions
+
+   
 v0.1.3
 ------
 
diff --git a/muon/__init__.py b/muon/__init__.py
index 52a5619..1e50138 100644
--- a/muon/__init__.py
+++ b/muon/__init__.py
@@ -13,4 +13,4 @@
 from . import atac
 from . import prot
 
-__version__ = "0.1.3"
+__version__ = "0.1.4"
diff --git a/tests/test_atac_preproc.py b/tests/test_atac_preproc.py
index 5aa1929..e23659b 100644
--- a/tests/test_atac_preproc.py
+++ b/tests/test_atac_preproc.py
@@ -11,7 +11,7 @@ class TestTFIDF(unittest.TestCase):
     def setUp(self):
         np.random.seed(2020)
         x = np.abs(np.random.normal(size=(4, 5)))
-        self.adata = AnnData(x)
+        self.adata = AnnData(x, dtype=x.dtype)
 
     def test_tfidf(self):
         adata = self.adata.copy()
@@ -49,11 +49,11 @@ class TestTFIDFSparse(unittest.TestCase):
     def setUp(self):
         np.random.seed(2020)
         x = rand(100, 10, density=0.2, format="csr")
-        self.adata = AnnData(x)
+        self.adata = AnnData(x, dtype=x.dtype)
 
     def test_tfidf(self):
         ac.pp.tfidf(self.adata, log_tf=True, log_idf=True)
-        self.assertEqual(str("%.3f" % self.adata.X[10, 9]), "18.748")
+        self.assertEqual(str("%.3f" % self.adata.X[10, 9]), "18.749")
         self.assertEqual(str("%.3f" % self.adata.X[50, 5]), "0.000")