diff --git a/.github/workflows/run_notebook_macos.yaml b/.github/workflows/run_notebook_macos.yaml index 280cb10..0c3435a 100644 --- a/.github/workflows/run_notebook_macos.yaml +++ b/.github/workflows/run_notebook_macos.yaml @@ -27,26 +27,25 @@ jobs: steps: - uses: actions/checkout@v4 - # - name: Create Conda environment and install dependencies - # run: | - # conda init bash - # source ~/.bash_profile - # conda activate scvi + - name: Create Conda environment and install dependencies + run: | + conda init bash + source ~/.bash_profile + conda activate scvi # - name: Install dependencies # run: | # python -m pip install --upgrade pip wheel uv # python -m pip install "scvi-tools[tests]" # python -m pip install jax-metal - # python -m ipykernel install - - name: Install Python kernel - run: | - python -m ipykernel install + # - name: Install Python kernel + # run: | + # python -m ipykernel install --user - name: Run notebook run: | - python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} + python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} - uses: peter-evans/create-pull-request@v5 with: