From 3c5028b290a12caa8335b191f286178dd019dc38 Mon Sep 17 00:00:00 2001
From: Ori Kronfeld <ori.kronfeld@weizmann.ac.il>
Date: Thu, 19 Dec 2024 14:24:40 +0200
Subject: [PATCH] Update run_notebook_macos.yaml

---
 .github/workflows/run_notebook_macos.yaml | 19 +++++++++----------
 1 file changed, 9 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/run_notebook_macos.yaml b/.github/workflows/run_notebook_macos.yaml
index 280cb10..0c3435a 100644
--- a/.github/workflows/run_notebook_macos.yaml
+++ b/.github/workflows/run_notebook_macos.yaml
@@ -27,26 +27,25 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      # - name: Create Conda environment and install dependencies
-      #   run: |
-      #     conda init bash
-      #     source ~/.bash_profile
-      #     conda activate scvi
+      - name: Create Conda environment and install dependencies
+        run: |
+          conda init bash
+          source ~/.bash_profile
+          conda activate scvi
 
       # - name: Install dependencies
       #   run: |
       #     python -m pip install --upgrade pip wheel uv
       #     python -m pip install "scvi-tools[tests]"
       #     python -m pip install jax-metal
-      #     python -m ipykernel install
 
-      - name: Install Python kernel
-        run: |
-          python -m ipykernel install
+      # - name: Install Python kernel
+      #   run: |
+      #     python -m ipykernel install --user
           
       - name: Run notebook
         run: |
-          python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}
+          python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }} 
 
       - uses: peter-evans/create-pull-request@v5
         with: