diff --git a/.github/workflows/run_notebook_macos.yaml b/.github/workflows/run_notebook_macos.yaml index b4daa8f..280cb10 100644 --- a/.github/workflows/run_notebook_macos.yaml +++ b/.github/workflows/run_notebook_macos.yaml @@ -1,4 +1,4 @@ -name: run notebook +name: run notebook macos on: workflow_call: @@ -27,19 +27,23 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Create Conda environment and install dependencies - run: | - conda init bash - source ~/.bash_profile - conda activate scvi + # - name: Create Conda environment and install dependencies + # run: | + # conda init bash + # source ~/.bash_profile + # conda activate scvi + + # - name: Install dependencies + # run: | + # python -m pip install --upgrade pip wheel uv + # python -m pip install "scvi-tools[tests]" + # python -m pip install jax-metal + # python -m ipykernel install - - name: Install dependencies + - name: Install Python kernel run: | - python -m pip install --upgrade pip wheel uv - python -m pip install "scvi-tools[tests]" - python -m pip install jax-metal python -m ipykernel install - + - name: Run notebook run: | python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook }}