Can not display color for render_shapes

[Lings01]

I used the example data from spatialdata.scverse.org(xenium_rep1_io) and plot py render_shapes. The plot color fill by na_color.
My code is here:
from spatialdata import bounding_box_query sdata = sd.read_zarr("./data.zarr") crop0 = lambda x: bounding_box_query( x, min_coordinate=[10000, 5000], max_coordinate=[12500, 7500], axes=("x", "y"), target_coordinate_system="global", ) crop0(sdata).pl.render_shapes('cell_boundaries',color='cell_area',table_name = 'table').pl.show(colorbar=True)

my packages version is here:

[LucaMarconato]

The gray color appears when the plotted geometries do not have the request annotation (color).

So, assuming that you are not experiencing a bug but the normal behavior, this means that: there is no column in the GeoDataFrame named cell_area and there is not table annotating your geometries that contain a var or obs named cell_area.

I think your table is annotating the labels, you can check this with:

from spatialdata.models import get_table_keys
get_table_keys(sdata['table'])

If that is the case, you can change the target of a table using the code shown in this example from the docs.

Please let me know if this helps solving your issue. If not, we'll look further into this.