r.yml

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.
#
# See https://github.com/r-lib/actions/tree/master/examples#readme for
# additional example workflows available for the R community.

name: R

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

permissions:
   contents: read

jobs:
  build:
    runs-on: ${{ matrix.config.os }}
    strategy:
      fail-fast: false
      matrix:
        r-version: ['4.4.1']
        config:
           - {os: windows-latest, r: 'release', windows_32_or_64: '64'}
           - {os: macOS-latest, r: 'release',}
           - {os: ubuntu-24.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
    env:
       RGL_USE_NULL: true
    steps:
      - uses: actions/checkout@v3
      - name: Set up R ${{ matrix.r-version }}
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.r-version }}
      - name: Install Dependencies (Windows)
        if: matrix.config.os == 'windows-latest'  
        run: choco install pandoc texlive
      - name: Install Dependencies (Linux)
        if: matrix.config.os == 'ubuntu-24.04'  
        run: sudo apt-get install pandoc libcurl4-openssl-dev libudunits2-dev libgdal-dev texlive-latex-base  libfontconfig1-dev
      - name: Install Dependencies (macOS)
        if: matrix.config.os == 'macOS-latest'
        run: brew install pandoc udunits gdal
      - name: Install R dependencies (macOs)
        if: matrix.config.os == 'macOS-latest'          
        run: |
          install.packages(c("remotes", "rcmdcheck", "plotly", "SEAHORS"))
          remotes::install_deps(dependencies = TRUE)
        shell: Rscript {0}    
      - name: Install R dependencies (windows, R '4.4.1')
        if: ${{ (matrix.config.os == 'windows-latest') && (matrix.r-version == '4.4.1') }}
        run: |
          install.packages(c("rlang", "remotes", "rcmdcheck", "sf", "Morpho", "stringi", "rgl"), INSTALL_opts = c("--no-multiarch"))
          install.packages(c("xfun", "stringi"), type="binary", INSTALL_opts = c("--no-multiarch"))
          remotes::install_github("dmurdoch/rgl", INSTALL_opts = c("--no-multiarch"))
          remotes::install_deps(dependencies = TRUE, INSTALL_opts = c("--no-multiarch"))
        env: 
           GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}  
        shell: Rscript {0}      
      - name: Install R dependencies (windows, R '3.6.3')
        if: ${{ (matrix.config.os == 'windows-latest') && (matrix.r-version == '3.6.3') }}
        run: |
          install.packages(c("remotes", "rcmdcheck", "sf", "purrr", "Morpho", "plyr", "tidyr", "plotly", "testthat", "shiny", "cxhull"), INSTALL_opts = c("--no-multiarch"))
          install.packages(c("rlang", "Rcpp", "htmltools", "digest", "cxhull"), type="binary", INSTALL_opts = c("--no-multiarch"))
          remotes::install_github("dmurdoch/rgl")
          remotes::install_deps(dependencies = TRUE)
        env: 
           GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
        shell: Rscript {0}              
      - name: Install R dependencies (Ubuntu)
        if: matrix.config.os == 'ubuntu-24.04'  
        run: |
          install.packages(c("remotes", "curl", "pkgbuild", "rcmdcheck", "purrr", "sf", "Morpho", "cxhull", "Rvcg", "SEAHORS", "svglite", "knitr", "systemfonts"))
          remotes::install_deps(dependencies = TRUE)
        shell: Rscript {0}
      - name: Check
        run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error")
        shell: Rscript {0}
      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true
      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: covr
      - name: Test coverage
        if: ${{ (failure()) && ( matrix.config.os == 'ubuntu-24.04' ) }}  
        run: covr::codecov(
            quiet = FALSE,
            clean = FALSE,
            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "archeoViz")
            )
        shell: Rscript {0}    
      - name: Show testthat output
        if: ${{ (always()) && ( matrix.config.os == 'ubuntu-24.04' ) }}  
        run: |
          ## --------------------------------------------------------------------
          find ${{ runner.temp }}/archeoViz -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash
      - name: Upload test results
        if: ${{ (failure()) && ( matrix.config.os == 'ubuntu-24.04' ) }}  
        uses: actions/upload-artifact@v3
        with:
          name: coverage-test-failures
          path: ${{ runner.temp }}/archeoViz