Merge pull request #224 from sarahet/fasta_formats #218
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lambda CI on Linux | |
| on: | |
| push: | |
| pull_request: | |
| env: | |
| SHARG_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -ex {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "gcc12 bifm" | |
| install: "g++-12" | |
| cxx: "g++-12" | |
| cmake_flags: "-DLAMBDA_WITH_BIFM=1" | |
| cc: "gcc-12" | |
| build_type: Release | |
| - name: "gcc13" | |
| install: "g++-13" | |
| cxx: "g++-13" | |
| cc: "gcc-13" | |
| build_type: Release | |
| - name: "gcc12" | |
| install: "g++-12" | |
| cxx: "g++-12" | |
| cc: "gcc-12" | |
| build_type: Release | |
| - name: "gcc11" | |
| install: "g++-11" | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| build_type: Release | |
| - name: "clang_format" | |
| install: "g++-11 clang-format-14" | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| build_type: Release | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| path: lambda | |
| fetch-depth: 1 | |
| submodules: recursive | |
| - name: Add package source | |
| continue-on-error: true | |
| run: | | |
| echo 'APT::Acquire::Retries "5";' | sudo tee -a /etc/apt/apt.conf.d/80-retries > /dev/null | |
| sudo add-apt-repository --no-update --yes ppa:ubuntu-toolchain-r/ppa | |
| sudo add-apt-repository --no-update --yes ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| - name: Install CMake | |
| run: sudo apt-get install --yes cmake | |
| - name: Install ccache | |
| run: sudo apt-get install --yes ccache | |
| - name: Install compiler ${{ matrix.install }} | |
| run: sudo apt-get install --yes ${{ matrix.install }} | |
| - name: Load ccache | |
| if: matrix.name != 'clang_format' | |
| uses: actions/cache@v2 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache- | |
| - name: Tool versions | |
| run: | | |
| env cmake --version | |
| env ${{ matrix.cxx }} --version | |
| - name: Configure tests | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../lambda -DLAMBDA_COMPILE_THREADS=2 -DLAMBDA_NATIVE_BUILD=OFF ${{ matrix.cmake_flags }} -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_C_COMPILER_LAUNCHER=ccache | |
| - name: Build tests | |
| if: matrix.name != 'clang_format' | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| CCACHE_MAXSIZE: 500M | |
| run: | | |
| ccache -p || true | |
| cd build | |
| make -k -j2 cli_test | |
| ccache -s || true | |
| - name: Run tests | |
| if: matrix.name != 'clang_format' | |
| run: | | |
| cd build | |
| ctest . -j2 --output-on-failure | |
| - name: Run Format Check | |
| if: matrix.name == 'clang_format' | |
| run: | | |
| cd build | |
| make check_format |