From ecccc41a92428b2eb1be96748d61b7071a6a6b2c Mon Sep 17 00:00:00 2001 From: Hannes Hauswedell Date: Fri, 24 Nov 2023 18:58:09 +0100 Subject: [PATCH] [test] update link to testdata repo --- test/cli/CMakeLists.txt | 26 ++- test/cli/search_test.cpp | 148 ++++++++++++++++ test/data/datasources.cmake | 324 +++++++++++++++++++----------------- 3 files changed, 346 insertions(+), 152 deletions(-) diff --git a/test/cli/CMakeLists.txt b/test/cli/CMakeLists.txt index db821ce16..965c36021 100644 --- a/test/cli/CMakeLists.txt +++ b/test/cli/CMakeLists.txt @@ -73,4 +73,28 @@ target_use_datasources (search_test FILES db_nucl.fasta.gz output_tblastn_fm_sensitive.m8 output_tblastn_fm_sensitive.sam output_tblastx_fm_sensitive.m8 - output_tblastx_fm_sensitive.sam) + output_tblastx_fm_sensitive.sam + output_blastn_bs_fm_pairs_default.m8 + output_blastn_bs_fm_pairs_default.sam + output_blastn_fm_pairs_default.m8 + output_blastn_fm_pairs_default.sam + output_blastp_fm_pairs_default.m8 + output_blastp_fm_pairs_default.sam + output_blastx_fm_pairs_default.m8 + output_blastx_fm_pairs_default.sam + output_tblastn_fm_pairs_default.m8 + output_tblastn_fm_pairs_default.sam + output_tblastx_fm_pairs_default.m8 + output_tblastx_fm_pairs_default.sam + output_blastn_bs_fm_pairs_sensitive.m8 + output_blastn_bs_fm_pairs_sensitive.sam + output_blastn_fm_pairs_sensitive.m8 + output_blastn_fm_pairs_sensitive.sam + output_blastp_fm_pairs_sensitive.m8 + output_blastp_fm_pairs_sensitive.sam + output_blastx_fm_pairs_sensitive.m8 + output_blastx_fm_pairs_sensitive.sam + output_tblastn_fm_pairs_sensitive.m8 + output_tblastn_fm_pairs_sensitive.sam + output_tblastx_fm_pairs_sensitive.m8 + output_tblastx_fm_pairs_sensitive.sam) diff --git a/test/cli/search_test.cpp b/test/cli/search_test.cpp index 89f5edcc6..9af95afb1 100644 --- a/test/cli/search_test.cpp +++ b/test/cli/search_test.cpp @@ -619,6 +619,154 @@ TEST_F(search_test, tblastx_fm_sensitive_sam) "queries_nucl.fasta.gz", "sensitive", "output_tblastx_fm_sensitive.sam", "sam", "output_tblastx_fm_sensitive.sam"); } +// pairs default mode + +TEST_F(search_test, blastn_fm_pairs_default_m8) +{ + run_search_test("mkindexn", "db_nucl.fasta.gz", "db_nucl_fm.fasta.gz.lba", "fm", "", "searchn", + "queries_nucl.fasta.gz", "pairs-default", "output_blastn_fm_pairs_default.m8", "m8", "output_blastn_fm_pairs_default.m8"); +} + +TEST_F(search_test, blastn_fm_pairs_default_sam) +{ + run_search_test("mkindexn", "db_nucl.fasta.gz", "db_nucl_fm.fasta.gz.lba", "fm", "", "searchn", + "queries_nucl.fasta.gz", "pairs-default", "output_blastn_fm_pairs_default.sam", "sam", "output_blastn_fm_pairs_default.sam"); +} + +TEST_F(search_test, blastn_bs_fm_pairs_default_m8) +{ + run_search_test("mkindexbs", "db_nucl_bs.fasta.gz", "db_nucl_bs_fm.fasta.gz.lba", "fm", "", "searchbs", + "queries_nucl_bs.fasta.gz", "pairs-default", "output_blastn_bs_fm_pairs_default.m8", "m8", "output_blastn_bs_fm_pairs_default.m8"); +} + +TEST_F(search_test, blastn_bs_fm_pairs_default_sam) +{ + run_search_test("mkindexbs", "db_nucl_bs.fasta.gz", "db_nucl_bs_fm.fasta.gz.lba", "fm", "", "searchbs", + "queries_nucl_bs.fasta.gz", "pairs-default", "output_blastn_bs_fm_pairs_default.sam", "sam", "output_blastn_bs_fm_pairs_default.sam"); +} + +TEST_F(search_test, blastp_fm_pairs_default_m8) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-default", "output_blastp_fm_pairs_default.m8", "m8", "output_blastp_fm_pairs_default.m8"); +} + +TEST_F(search_test, blastp_fm_pairs_default_sam) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-default", "output_blastp_fm_pairs_default.sam", "sam", "output_blastp_fm_pairs_default.sam"); +} + +TEST_F(search_test, blastx_fm_pairs_default_m8) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-default", "output_blastx_fm_pairs_default.m8", "m8", "output_blastx_fm_pairs_default.m8"); +} + +TEST_F(search_test, blastx_fm_pairs_default_sam) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-default", "output_blastx_fm_pairs_default.sam", "sam", "output_blastx_fm_pairs_default.sam"); +} + +TEST_F(search_test, tblastn_fm_pairs_default_m8) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-default", "output_tblastn_fm_pairs_default.m8", "m8", "output_tblastn_fm_pairs_default.m8"); +} + +TEST_F(search_test, tblastn_fm_pairs_default_sam) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-default", "output_tblastn_fm_pairs_default.sam", "sam", "output_tblastn_fm_pairs_default.sam"); +} + +TEST_F(search_test, tblastx_fm_pairs_default_m8) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-default", "output_tblastx_fm_pairs_default.m8", "m8", "output_tblastx_fm_pairs_default.m8"); +} + +TEST_F(search_test, tblastx_fm_pairs_default_sam) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-default", "output_tblastx_fm_pairs_default.sam", "sam", "output_tblastx_fm_pairs_default.sam"); +} + +// pairs sensitive mode + +TEST_F(search_test, blastn_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexn", "db_nucl.fasta.gz", "db_nucl_fm.fasta.gz.lba", "fm", "", "searchn", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_blastn_fm_pairs_sensitive.m8", "m8", "output_blastn_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, blastn_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexn", "db_nucl.fasta.gz", "db_nucl_fm.fasta.gz.lba", "fm", "", "searchn", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_blastn_fm_pairs_sensitive.sam", "sam", "output_blastn_fm_pairs_sensitive.sam"); +} + +TEST_F(search_test, blastn_bs_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexbs", "db_nucl_bs.fasta.gz", "db_nucl_bs_fm.fasta.gz.lba", "fm", "", "searchbs", + "queries_nucl_bs.fasta.gz", "pairs-sensitive", "output_blastn_bs_fm_pairs_sensitive.m8", "m8", "output_blastn_bs_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, blastn_bs_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexbs", "db_nucl_bs.fasta.gz", "db_nucl_bs_fm.fasta.gz.lba", "fm", "", "searchbs", + "queries_nucl_bs.fasta.gz", "pairs-sensitive", "output_blastn_bs_fm_pairs_sensitive.sam", "sam", "output_blastn_bs_fm_pairs_sensitive.sam"); +} + +TEST_F(search_test, blastp_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-sensitive", "output_blastp_fm_pairs_sensitive.m8", "m8", "output_blastp_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, blastp_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-sensitive", "output_blastp_fm_pairs_sensitive.sam", "sam", "output_blastp_fm_pairs_sensitive.sam"); +} + +TEST_F(search_test, blastx_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_blastx_fm_pairs_sensitive.m8", "m8", "output_blastx_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, blastx_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexp", "db_prot.fasta.gz", "db_prot_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_blastx_fm_pairs_sensitive.sam", "sam", "output_blastx_fm_pairs_sensitive.sam"); +} + +TEST_F(search_test, tblastn_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-sensitive", "output_tblastn_fm_pairs_sensitive.m8", "m8", "output_tblastn_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, tblastn_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_prot.fasta.gz", "pairs-sensitive", "output_tblastn_fm_pairs_sensitive.sam", "sam", "output_tblastn_fm_pairs_sensitive.sam"); +} + +TEST_F(search_test, tblastx_fm_pairs_sensitive_m8) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_tblastx_fm_pairs_sensitive.m8", "m8", "output_tblastx_fm_pairs_sensitive.m8"); +} + +TEST_F(search_test, tblastx_fm_pairs_sensitive_sam) +{ + run_search_test("mkindexp", "db_nucl.fasta.gz", "db_trans_fm.fasta.gz.lba", "fm", "li10", "searchp", + "queries_nucl.fasta.gz", "pairs-sensitive", "output_tblastx_fm_pairs_sensitive.sam", "sam", "output_tblastx_fm_pairs_sensitive.sam"); +} + // special options TEST_F(search_test, lazy_loading) diff --git a/test/data/datasources.cmake b/test/data/datasources.cmake index 99d8e57d3..9e166a689 100644 --- a/test/data/datasources.cmake +++ b/test/data/datasources.cmake @@ -4,7 +4,7 @@ include (cmake/app_datasources.cmake) ## Index input files -set(BASEURL "https://raw.githubusercontent.com/h-2/lambda-testdata/21e2a230deec072ddc6da4b67403ce684dddf2c2") +set(BASEURL "https://raw.githubusercontent.com/h-2/lambda-testdata/832453c8721094af511a2d7041dbb107a9ecc912") declare_datasource (FILE db_nucl.fasta.gz URL ${BASEURL}/input_files/db_nucl.fasta.gz @@ -68,218 +68,240 @@ declare_datasource (FILE queries_prot.fasta.gz ## Search output files -declare_datasource (FILE output_blastn_fm.bam - URL ${BASEURL}/output_files/output_blastn_fm.bam - URL_HASH SHA256=f181cd5e083df6879044153eced4b545a6c392e3c3e55f733799c37f32be16fb) - -declare_datasource (FILE output_blastn_fm.m0 - URL ${BASEURL}/output_files/output_blastn_fm.m0 - URL_HASH SHA256=8d4083e6c4f0979497df61fec5169c1e82a9111bf052b77980c987a5012acddf) - -declare_datasource (FILE output_blastn_fm.m8 - URL ${BASEURL}/output_files/output_blastn_fm.m8 - URL_HASH SHA256=5ee0f2c00efa90aa564b4f3a1a05e5bce084421612d1776d4431377e296c9f5f) - -declare_datasource (FILE output_blastn_fm.m9 - URL ${BASEURL}/output_files/output_blastn_fm.m9 - URL_HASH SHA256=46090b822625b64628c0b4bbb7c068a1224a77d5e6c6dd7f5dc4901943e94096) - -declare_datasource (FILE output_blastn_fm.sam - URL ${BASEURL}/output_files/output_blastn_fm.sam - URL_HASH SHA256=a1de463d54ee72ff24cade4526b340aab9e48d6232e3e98b36b9f6560260ef0b) - +declare_datasource (FILE output_blastn_bs_fm_fast.m8 + URL ${BASEURL}/output_files/output_blastn_bs_fm_fast.m8 + URL_HASH SHA256=732b439bded780e0b4b68478e6e89368934cab43d261c2f41e48d90ab505a01e) +declare_datasource (FILE output_blastn_bs_fm_fast.sam + URL ${BASEURL}/output_files/output_blastn_bs_fm_fast.sam + URL_HASH SHA256=2247d450da5ad0fa76f630e373bbf70d0fde79a736637d19f8f25d985178fcfa) +declare_datasource (FILE output_blastn_bs_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_blastn_bs_fm_pairs_default.m8 + URL_HASH SHA256=11c0e206f0c48bbe87bb464c175bd6bea3ce25c02769d33961beeadba15fcc98) +declare_datasource (FILE output_blastn_bs_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_blastn_bs_fm_pairs_default.sam + URL_HASH SHA256=55e2f168ab0a3fd2d1d55e8344473ab67c75c509f8e42c3fa3d0cb5d655141cf) +declare_datasource (FILE output_blastn_bs_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_blastn_bs_fm_pairs_sensitive.m8 + URL_HASH SHA256=1bd31e06f5c20c273b5079a8f483ae574daa6c8e38b50cdf45bacad18f940901) +declare_datasource (FILE output_blastn_bs_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_blastn_bs_fm_pairs_sensitive.sam + URL_HASH SHA256=ff854acd2bba55142275ace681c9270d2e287e3be7123f7ce69598cde2eb98ca) +declare_datasource (FILE output_blastn_bs_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_blastn_bs_fm_sensitive.m8 + URL_HASH SHA256=5836c6941f04119823ec9e23ebf7cfec1c9b1e59d8cc486211b0aeb1d34ca0ca) +declare_datasource (FILE output_blastn_bs_fm_sensitive.sam + URL ${BASEURL}/output_files/output_blastn_bs_fm_sensitive.sam + URL_HASH SHA256=bee4b36f98572c6a4d6cc4f9c6cacf40b627b57dc8c5964d82921c9e7bd884c8) declare_datasource (FILE output_blastn_bs_fm.bam URL ${BASEURL}/output_files/output_blastn_bs_fm.bam - URL_HASH SHA256=8a73e5bca4b7a3225114170906c520c74bd066c2540898369a9c6ab24f517f5e) - + URL_HASH SHA256=cb8204f66fe135f39a01a495d553a4d2ebb7f190aab1cc92fc78e158d8ebb6ae) declare_datasource (FILE output_blastn_bs_fm.m0 URL ${BASEURL}/output_files/output_blastn_bs_fm.m0 - URL_HASH SHA256=5be6f6e2e5e57a9a07d364d1fd5c376e13db9aa4093f1445cdca17ee7e143790) - + URL_HASH SHA256=20227f3db16bf6dd5ecb5c22d831eb42e976f664df3678a49670369366ea3e00) declare_datasource (FILE output_blastn_bs_fm.m8 URL ${BASEURL}/output_files/output_blastn_bs_fm.m8 - URL_HASH SHA256=a03ec852936061867791a4dabffffe8cead43b24c0e0afba398e134841fc193d) - + URL_HASH SHA256=732b439bded780e0b4b68478e6e89368934cab43d261c2f41e48d90ab505a01e) declare_datasource (FILE output_blastn_bs_fm.m9 URL ${BASEURL}/output_files/output_blastn_bs_fm.m9 - URL_HASH SHA256=2b71a95f02f5cc59037d6d1b34b4fd6141e2d36a0e9a8803a6d6c5c9e98482de) - + URL_HASH SHA256=0bdcd2dae96480227f4da0dd431118ba0564c923f1fe9ea1f3eaf1cf143af44f) declare_datasource (FILE output_blastn_bs_fm.sam URL ${BASEURL}/output_files/output_blastn_bs_fm.sam - URL_HASH SHA256=3fe84a825c55004a87b34ee24312d64961a08737e91a948bfe0b5b3bcb2f3e38) - + URL_HASH SHA256=2247d450da5ad0fa76f630e373bbf70d0fde79a736637d19f8f25d985178fcfa) +declare_datasource (FILE output_blastn_fm_fast.m8 + URL ${BASEURL}/output_files/output_blastn_fm_fast.m8 + URL_HASH SHA256=8486e576c6ce0ed0f605f20f794ec2a7804cdb302c8261ab975fdd3b8f8f02b0) +declare_datasource (FILE output_blastn_fm_fast.sam + URL ${BASEURL}/output_files/output_blastn_fm_fast.sam + URL_HASH SHA256=105b00b92787338dbd3b2bed3322d452b75427f66d9cdc6c71028361afccc623) +declare_datasource (FILE output_blastn_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_blastn_fm_pairs_default.m8 + URL_HASH SHA256=f3ce1c515a7e48d1594ef7de7ec3af03fed352b111dfb387304012dda5d33b53) +declare_datasource (FILE output_blastn_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_blastn_fm_pairs_default.sam + URL_HASH SHA256=f9edd30876b9a75d99d4bf52b71f6da22038de43ba33f711805044ad8d1d5794) +declare_datasource (FILE output_blastn_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_blastn_fm_pairs_sensitive.m8 + URL_HASH SHA256=367660b88239aaa5ed32dbce7702e3c22eb5adb7c6f1c6f043a8e881c930e872) +declare_datasource (FILE output_blastn_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_blastn_fm_pairs_sensitive.sam + URL_HASH SHA256=e65eab36c18315d830d1abcf6b052657db113797e7a3cd7db7fc095b34a00b54) +declare_datasource (FILE output_blastn_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_blastn_fm_sensitive.m8 + URL_HASH SHA256=e173961e41df452e67dff97e3eeee8dfaec6cdfa3b2250d2c6772c06bb2801de) +declare_datasource (FILE output_blastn_fm_sensitive.sam + URL ${BASEURL}/output_files/output_blastn_fm_sensitive.sam + URL_HASH SHA256=9737c9d2fa1f82f851a614fc84d91298e6b2c33b1809ea787708077c3e47c803) +declare_datasource (FILE output_blastn_fm.bam + URL ${BASEURL}/output_files/output_blastn_fm.bam + URL_HASH SHA256=989ecf8caddc2bbfe84c1c47d74fe88752027effc19e02b8ad30308022835996) +declare_datasource (FILE output_blastn_fm.m0 + URL ${BASEURL}/output_files/output_blastn_fm.m0 + URL_HASH SHA256=b533756dc14ee58fd350f5fc4f3ed8dac38dba8100185f3e1a23800fb06cba01) +declare_datasource (FILE output_blastn_fm.m8 + URL ${BASEURL}/output_files/output_blastn_fm.m8 + URL_HASH SHA256=18b7a0feb4b5e76a44be7ec4ae26ceb1be05fa257df0725a6d231f841de01d54) +declare_datasource (FILE output_blastn_fm.m9 + URL ${BASEURL}/output_files/output_blastn_fm.m9 + URL_HASH SHA256=f20ecfabbaf801ec7532b956931b36cbcaa4de5f9a946e139597334dfb50c132) +declare_datasource (FILE output_blastn_fm.sam + URL ${BASEURL}/output_files/output_blastn_fm.sam + URL_HASH SHA256=ca8202a68e22d59e731d023c021244e27e664077d8aa68662041346ac828c110) +declare_datasource (FILE output_blastp_fm_fast.m8 + URL ${BASEURL}/output_files/output_blastp_fm_fast.m8 + URL_HASH SHA256=753acc7afccbcacc8e585e7a83b7b295548ea536b23800ca90a9566bcb7a48cb) +declare_datasource (FILE output_blastp_fm_fast.sam + URL ${BASEURL}/output_files/output_blastp_fm_fast.sam + URL_HASH SHA256=36bca3f2ee56d2234ed44f8351ad83b5fe267c9e75a9eea5c13d34565f20f2ac) +declare_datasource (FILE output_blastp_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_blastp_fm_pairs_default.m8 + URL_HASH SHA256=8dd2211fbdf3dcbdbd5a53ce02f66d4cbe37ffe5543ba61d3cc324f5c6b698a8) +declare_datasource (FILE output_blastp_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_blastp_fm_pairs_default.sam + URL_HASH SHA256=f1f874880d6ba5280f1fcb2c0e5ff2746ed343a7e9c16e49e4d0db4b48e32041) +declare_datasource (FILE output_blastp_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_blastp_fm_pairs_sensitive.m8 + URL_HASH SHA256=9c9bb4c98315f1c3fee2116bc565b0eb9abc061af09282680275118a0c884fcf) +declare_datasource (FILE output_blastp_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_blastp_fm_pairs_sensitive.sam + URL_HASH SHA256=e6d733403afc9333429a8617ce91a326861b9c82cb676a819d8c281c7e1fdcea) +declare_datasource (FILE output_blastp_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_blastp_fm_sensitive.m8 + URL_HASH SHA256=25b8fa3de4eda51b016baa90ade64f5ff4f409b37b32b16226e46ca350673823) +declare_datasource (FILE output_blastp_fm_sensitive.sam + URL ${BASEURL}/output_files/output_blastp_fm_sensitive.sam + URL_HASH SHA256=83fc52cfe429c8ac4d790f69f32856f1426ed003c128d6dc4c8767e977e5e9c1) declare_datasource (FILE output_blastp_fm.bam URL ${BASEURL}/output_files/output_blastp_fm.bam URL_HASH SHA256=322932054405c802211f9fd1f9e86a96c8b19ea85d2eaa8cbd18f4bcfb1d5131) - declare_datasource (FILE output_blastp_fm.m0 URL ${BASEURL}/output_files/output_blastp_fm.m0 URL_HASH SHA256=56e29329f35f1868d6c5a2ab0c88e7ea1446d433f5d7bb70308ceb97599fcd5f) - declare_datasource (FILE output_blastp_fm.m8 URL ${BASEURL}/output_files/output_blastp_fm.m8 URL_HASH SHA256=99f520bb55f5c1b371ae5ba41b881c21360a84e7fcb8ff097e01036beb801d4c) - declare_datasource (FILE output_blastp_fm.m9 URL ${BASEURL}/output_files/output_blastp_fm.m9 URL_HASH SHA256=3d7b519b26419361c37f5512b28220f3004620aafa2aae62f0e13bbee3ee92f2) - declare_datasource (FILE output_blastp_fm.sam URL ${BASEURL}/output_files/output_blastp_fm.sam URL_HASH SHA256=d7267490e2c6c1ebf838fb7f08a5f370bf0f2b23024ca76db6bfed440851fc91) - +declare_datasource (FILE output_blastx_fm_fast.m8 + URL ${BASEURL}/output_files/output_blastx_fm_fast.m8 + URL_HASH SHA256=5554e8dcd4de9ef02818e18ad8fb185594762a425aded7929a0b2a574137f46e) +declare_datasource (FILE output_blastx_fm_fast.sam + URL ${BASEURL}/output_files/output_blastx_fm_fast.sam + URL_HASH SHA256=557394a3c75c2da49d3d15c34f10f1eca2e4a934102cfbe92081df0f704b1828) +declare_datasource (FILE output_blastx_fm_lazy.m8 + URL ${BASEURL}/output_files/output_blastx_fm_lazy.m8 + URL_HASH SHA256=d3bb3a5f101e9deab0b7605b83d3c2ce03270545923a65d10b0c7afb52c324b7) +declare_datasource (FILE output_blastx_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_blastx_fm_pairs_default.m8 + URL_HASH SHA256=9479d7bb3ca8e53b1d425b70867f0d4aeecd73026596997724f4b1d3458ea16f) +declare_datasource (FILE output_blastx_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_blastx_fm_pairs_default.sam + URL_HASH SHA256=44c8a52fa3c76ca943de5dc47e8a20a3f09f70f3c513096f1bc1101b822699e4) +declare_datasource (FILE output_blastx_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_blastx_fm_pairs_sensitive.m8 + URL_HASH SHA256=abdd532001a794d3abbe3411e842271eae503684bca26c259c0170c2d6da0a61) +declare_datasource (FILE output_blastx_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_blastx_fm_pairs_sensitive.sam + URL_HASH SHA256=49b24eb192c7dbcee68662ba789ecd772a7160229e296653f7960e1ab639f1cf) +declare_datasource (FILE output_blastx_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_blastx_fm_sensitive.m8 + URL_HASH SHA256=59f22a6158b48463b408b329db9472412838455dfbd74a6df7ab8ed4a0240914) +declare_datasource (FILE output_blastx_fm_sensitive.sam + URL ${BASEURL}/output_files/output_blastx_fm_sensitive.sam + URL_HASH SHA256=1402fe5c5161be0df142b279ef293f6edb6685ace4f85c2a6e8b5ff43e41a8b8) declare_datasource (FILE output_blastx_fm.bam URL ${BASEURL}/output_files/output_blastx_fm.bam - URL_HASH SHA256=490b13b75528c87530a3f3028bb825ddb96b46bcbe6dbea76ee782ec17abb5a5) - + URL_HASH SHA256=7a4cad866e89ef84839bba6f9eece7f20528758075fc7faac2419c9406be84cc) declare_datasource (FILE output_blastx_fm.m0 URL ${BASEURL}/output_files/output_blastx_fm.m0 - URL_HASH SHA256=08b1500f717cb596bd1be7919cd72b6ac2c69caccae2716072c046c45122fbdc) - + URL_HASH SHA256=ad5d8ed1fa3ea34edc9e3f5f0c256a7be83db7910fb45a65b514bb506a6b91fe) declare_datasource (FILE output_blastx_fm.m8 URL ${BASEURL}/output_files/output_blastx_fm.m8 - URL_HASH SHA256=f6345d4856a143b9a425a1cca75889e49d2dbc834a817b8ef261d02ac33d2d0d) - + URL_HASH SHA256=d3bb3a5f101e9deab0b7605b83d3c2ce03270545923a65d10b0c7afb52c324b7) declare_datasource (FILE output_blastx_fm.m9 URL ${BASEURL}/output_files/output_blastx_fm.m9 - URL_HASH SHA256=4965194ec39831d4b9343eebc49cbc0871b0cee3fb7219c5626846477dc0307c) - + URL_HASH SHA256=daabecc9b0ef1dd9f27ac7a27baf00327043b73ee94f3dc0a398a3ef2faebc02) declare_datasource (FILE output_blastx_fm.sam URL ${BASEURL}/output_files/output_blastx_fm.sam - URL_HASH SHA256=2447e15abfcfca8b7b91ec788e46b96b363d9d7b125a95471898956da58fa80c) - + URL_HASH SHA256=78f55f6dbff1205e09efa00b65498cb0de5e1d907be394cc8b73e75be7069a3e) +declare_datasource (FILE output_tblastn_fm_fast.m8 + URL ${BASEURL}/output_files/output_tblastn_fm_fast.m8 + URL_HASH SHA256=e7e34710b246347dfdc12619b064da1ec0f1d248316901209d89672e92d9bbb2) +declare_datasource (FILE output_tblastn_fm_fast.sam + URL ${BASEURL}/output_files/output_tblastn_fm_fast.sam + URL_HASH SHA256=e416ddf4d79ea72f8240d291c17c5e41fc2a2d7b4560f1c9ad600b498f9e4d1a) +declare_datasource (FILE output_tblastn_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_tblastn_fm_pairs_default.m8 + URL_HASH SHA256=9a8416ca080499af6c91e63d6c6ee5315a5440177dc8fc167c490d3d0df05c7c) +declare_datasource (FILE output_tblastn_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_tblastn_fm_pairs_default.sam + URL_HASH SHA256=06d8a2fefc4bfb3fc39605f06bf28b96c442db25c228f59e24fc5c51c68597dd) +declare_datasource (FILE output_tblastn_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_tblastn_fm_pairs_sensitive.m8 + URL_HASH SHA256=877bb8dbed8a69a065fa82dd3af3f68e393db5ccda575ab62f1ac19c69cb08ee) +declare_datasource (FILE output_tblastn_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_tblastn_fm_pairs_sensitive.sam + URL_HASH SHA256=5cc60d9032f4f8f7de1643d1f5181534288af78969b77051640efc0a7e1ab852) +declare_datasource (FILE output_tblastn_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_tblastn_fm_sensitive.m8 + URL_HASH SHA256=c07e11add4b48d1d910c76f95a007de452c16a8fe8ea83f695a1c75ee4152db1) +declare_datasource (FILE output_tblastn_fm_sensitive.sam + URL ${BASEURL}/output_files/output_tblastn_fm_sensitive.sam + URL_HASH SHA256=b9b54e58f158746e1d69fc24d841ba637c859849bc9fe50e2c75cf3bc634a3e8) declare_datasource (FILE output_tblastn_fm.bam URL ${BASEURL}/output_files/output_tblastn_fm.bam URL_HASH SHA256=0d646463d379eeadca4af6705081854034d2e07bce870dee1165f11dc50f9336) - declare_datasource (FILE output_tblastn_fm.m0 URL ${BASEURL}/output_files/output_tblastn_fm.m0 URL_HASH SHA256=d3922d4db0245d3c797b4ca5a982e73c3331be7b7f3282754e31daf2820691aa) - declare_datasource (FILE output_tblastn_fm.m8 URL ${BASEURL}/output_files/output_tblastn_fm.m8 URL_HASH SHA256=316ff6d392d1553bf3115f41e14e5cfced72f6b22459e487b0def80c37123b44) - declare_datasource (FILE output_tblastn_fm.m9 URL ${BASEURL}/output_files/output_tblastn_fm.m9 URL_HASH SHA256=720895bca93a35543fc58f2dbc490ba9ce531195fe71d0dbbc0ed41e6392002f) - declare_datasource (FILE output_tblastn_fm.sam URL ${BASEURL}/output_files/output_tblastn_fm.sam URL_HASH SHA256=b2ca3d794d03154ed956d095e531858d71aac8d81b4fdee5ce18ed585300e034) - +declare_datasource (FILE output_tblastx_fm_fast.m8 + URL ${BASEURL}/output_files/output_tblastx_fm_fast.m8 + URL_HASH SHA256=dea0901a96f8dafd9e3f7518223257ac6ad0b8e4bf2ec42fe05701707ed72b4a) +declare_datasource (FILE output_tblastx_fm_fast.sam + URL ${BASEURL}/output_files/output_tblastx_fm_fast.sam + URL_HASH SHA256=3c23be9c52c1f05acef72acbfc2ea316e18a9e3fa9a9ad1f59903118783c4129) +declare_datasource (FILE output_tblastx_fm_pairs_default.m8 + URL ${BASEURL}/output_files/output_tblastx_fm_pairs_default.m8 + URL_HASH SHA256=8539cce5bb7ca18974eccf060b361fc09271449add941b21a99b040b001c4683) +declare_datasource (FILE output_tblastx_fm_pairs_default.sam + URL ${BASEURL}/output_files/output_tblastx_fm_pairs_default.sam + URL_HASH SHA256=0ebc191fac3f01ab6d72dd29729e49d0b06da3329281209165abd6a0260af02e) +declare_datasource (FILE output_tblastx_fm_pairs_sensitive.m8 + URL ${BASEURL}/output_files/output_tblastx_fm_pairs_sensitive.m8 + URL_HASH SHA256=59d760626164cdb2564686ce30c36d71c881f657eebca8b2a06ebe3b9a70d50d) +declare_datasource (FILE output_tblastx_fm_pairs_sensitive.sam + URL ${BASEURL}/output_files/output_tblastx_fm_pairs_sensitive.sam + URL_HASH SHA256=5bf3a0fe8ae736b072fd99df764c2039b2dcd28c4486b21c3796b5712d05c1fc) +declare_datasource (FILE output_tblastx_fm_sensitive.m8 + URL ${BASEURL}/output_files/output_tblastx_fm_sensitive.m8 + URL_HASH SHA256=a590cff9711dbbad654a7317c081af5ffacda9c934ece3bf7b59eec223c2cf1f) +declare_datasource (FILE output_tblastx_fm_sensitive.sam + URL ${BASEURL}/output_files/output_tblastx_fm_sensitive.sam + URL_HASH SHA256=8b400bf75ba657dd29983fcf0e5f0f8de2243d8b68287af8b884aab61524ba2e) declare_datasource (FILE output_tblastx_fm.bam URL ${BASEURL}/output_files/output_tblastx_fm.bam URL_HASH SHA256=ab3d60dc3beaa6d5ac78aaa7c6bd212297c9e7ab982fc9c9f6d3c69c6b819b87) - declare_datasource (FILE output_tblastx_fm.m0 URL ${BASEURL}/output_files/output_tblastx_fm.m0 URL_HASH SHA256=fcb43c8084305372ebaf931736bc1dc61a1589021aa3d36ff1d0610e7a423cbb) - declare_datasource (FILE output_tblastx_fm.m8 URL ${BASEURL}/output_files/output_tblastx_fm.m8 URL_HASH SHA256=d040e8debb4e5cff6443e676e77449a65f4ffdb83924660f339d640b121964f1) - declare_datasource (FILE output_tblastx_fm.m9 URL ${BASEURL}/output_files/output_tblastx_fm.m9 URL_HASH SHA256=970a2a628e1816243645e6eabc26ee8f20f2f2ae447e5d18b432fb125d25e867) - declare_datasource (FILE output_tblastx_fm.sam URL ${BASEURL}/output_files/output_tblastx_fm.sam URL_HASH SHA256=6f218b39e8785e1bebbe8be486237e03e06d9fccd41a5e57e575539cfe4eab6e) - -declare_datasource (FILE output_blastn_fm_fast.sam - URL ${BASEURL}/output_files/output_blastn_fm_fast.sam - URL_HASH SHA256=a8121e6138ab3c1d5c0e6b32a38782f07806ff4806a46b706444ebf8cdb318b8) - -declare_datasource (FILE output_blastn_fm_fast.m8 - URL ${BASEURL}/output_files/output_blastn_fm_fast.m8 - URL_HASH SHA256=b6dd323c73944d78367cf4f8b6f22f292d89876c4e6a6020fde7461a5115cfad) - -declare_datasource (FILE output_blastn_bs_fm_fast.sam - URL ${BASEURL}/output_files/output_blastn_bs_fm_fast.sam - URL_HASH SHA256=3fe84a825c55004a87b34ee24312d64961a08737e91a948bfe0b5b3bcb2f3e38) - -declare_datasource (FILE output_blastn_bs_fm_fast.m8 - URL ${BASEURL}/output_files/output_blastn_bs_fm_fast.m8 - URL_HASH SHA256=a03ec852936061867791a4dabffffe8cead43b24c0e0afba398e134841fc193d) - -declare_datasource (FILE output_blastp_fm_fast.sam - URL ${BASEURL}/output_files/output_blastp_fm_fast.sam - URL_HASH SHA256=36bca3f2ee56d2234ed44f8351ad83b5fe267c9e75a9eea5c13d34565f20f2ac) - -declare_datasource (FILE output_blastp_fm_fast.m8 - URL ${BASEURL}/output_files/output_blastp_fm_fast.m8 - URL_HASH SHA256=753acc7afccbcacc8e585e7a83b7b295548ea536b23800ca90a9566bcb7a48cb) - -declare_datasource (FILE output_blastx_fm_fast.sam - URL ${BASEURL}/output_files/output_blastx_fm_fast.sam - URL_HASH SHA256=557394a3c75c2da49d3d15c34f10f1eca2e4a934102cfbe92081df0f704b1828) - -declare_datasource (FILE output_blastx_fm_fast.m8 - URL ${BASEURL}/output_files/output_blastx_fm_fast.m8 - URL_HASH SHA256=5554e8dcd4de9ef02818e18ad8fb185594762a425aded7929a0b2a574137f46e) - -declare_datasource (FILE output_tblastn_fm_fast.sam - URL ${BASEURL}/output_files/output_tblastn_fm_fast.sam - URL_HASH SHA256=e416ddf4d79ea72f8240d291c17c5e41fc2a2d7b4560f1c9ad600b498f9e4d1a) - -declare_datasource (FILE output_tblastn_fm_fast.m8 - URL ${BASEURL}/output_files/output_tblastn_fm_fast.m8 - URL_HASH SHA256=e7e34710b246347dfdc12619b064da1ec0f1d248316901209d89672e92d9bbb2) - -declare_datasource (FILE output_tblastx_fm_fast.sam - URL ${BASEURL}/output_files/output_tblastx_fm_fast.sam - URL_HASH SHA256=3c23be9c52c1f05acef72acbfc2ea316e18a9e3fa9a9ad1f59903118783c4129) - -declare_datasource (FILE output_tblastx_fm_fast.m8 - URL ${BASEURL}/output_files/output_tblastx_fm_fast.m8 - URL_HASH SHA256=dea0901a96f8dafd9e3f7518223257ac6ad0b8e4bf2ec42fe05701707ed72b4a) - -declare_datasource (FILE output_blastn_fm_sensitive.sam - URL ${BASEURL}/output_files/output_blastn_fm_sensitive.sam - URL_HASH SHA256=40042463f6a551e27cf2820650be691f39417bce1d6f24782a1718ff9cbfc6c5) - -declare_datasource (FILE output_blastn_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_blastn_fm_sensitive.m8 - URL_HASH SHA256=1656959b59c448c919c3e03398eece936fb196f141e1ffbc21185859a144ebd7) - -declare_datasource (FILE output_blastn_bs_fm_sensitive.sam - URL ${BASEURL}/output_files/output_blastn_bs_fm_sensitive.sam - URL_HASH SHA256=5f4bb4f9b8f43563856c04998069972e01882b694151bc235ead384f97aa3780) - -declare_datasource (FILE output_blastn_bs_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_blastn_bs_fm_sensitive.m8 - URL_HASH SHA256=947860f9fb506eb0626de5c18bf47b6ba8efaa75fd765a5adc66b95df7958cfd) - -declare_datasource (FILE output_blastp_fm_sensitive.sam - URL ${BASEURL}/output_files/output_blastp_fm_sensitive.sam - URL_HASH SHA256=83fc52cfe429c8ac4d790f69f32856f1426ed003c128d6dc4c8767e977e5e9c1) - -declare_datasource (FILE output_blastp_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_blastp_fm_sensitive.m8 - URL_HASH SHA256=25b8fa3de4eda51b016baa90ade64f5ff4f409b37b32b16226e46ca350673823) - -declare_datasource (FILE output_blastx_fm_sensitive.sam - URL ${BASEURL}/output_files/output_blastx_fm_sensitive.sam - URL_HASH SHA256=d7bf59418964c5b7c5e7d10a173d07d2b4fdaaaa7d684a1a2df1c323fe8620c6) - -declare_datasource (FILE output_blastx_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_blastx_fm_sensitive.m8 - URL_HASH SHA256=039b2929a78ea1c4768a215dd7c6f060bea8c11feab6831d767ca4d7d9cdc0fa) - -declare_datasource (FILE output_tblastn_fm_sensitive.sam - URL ${BASEURL}/output_files/output_tblastn_fm_sensitive.sam - URL_HASH SHA256=b9b54e58f158746e1d69fc24d841ba637c859849bc9fe50e2c75cf3bc634a3e8) - -declare_datasource (FILE output_tblastn_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_tblastn_fm_sensitive.m8 - URL_HASH SHA256=c07e11add4b48d1d910c76f95a007de452c16a8fe8ea83f695a1c75ee4152db1) - -declare_datasource (FILE output_tblastx_fm_sensitive.sam - URL ${BASEURL}/output_files/output_tblastx_fm_sensitive.sam - URL_HASH SHA256=8b400bf75ba657dd29983fcf0e5f0f8de2243d8b68287af8b884aab61524ba2e) - -declare_datasource (FILE output_tblastx_fm_sensitive.m8 - URL ${BASEURL}/output_files/output_tblastx_fm_sensitive.m8 - URL_HASH SHA256=a590cff9711dbbad654a7317c081af5ffacda9c934ece3bf7b59eec223c2cf1f)