diff --git a/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp b/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp index 849deb955e..15d293f5ca 100644 --- a/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp +++ b/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp @@ -85,7 +85,7 @@ namespace seqan3 /*!\interface seqan3::aligned_sequence <> * \extends seqan3::sequence * \brief The generic concept for an aligned sequence. - * \ingroup aligned_sequence + * \ingroup alignment_aligned_sequence * * This concept describes the requirements a sequence must fulfil in order to represent a sequence in an alignment. * @@ -111,7 +111,7 @@ concept aligned_sequence = sequence && std::equality_comparable_with header](https://en.cppreference.com/w/cpp/header/new) from C++17's standard library. diff --git a/test/documentation/doc_dev/CMakeLists.txt b/test/documentation/doc_dev/CMakeLists.txt index b1cfb18d28..23f38be5af 100644 --- a/test/documentation/doc_dev/CMakeLists.txt +++ b/test/documentation/doc_dev/CMakeLists.txt @@ -9,6 +9,7 @@ message (STATUS "Configuring devel doc.") set (SEQAN3_DOXYGEN_OUTPUT_DIR "${CMAKE_CURRENT_BINARY_DIR}") set (SEQAN3_DOXYGEN_EXCLUDE_SYMBOLS "") +set (SEQAN3_DOXYGEN_EXCLUDE_PATTERNS "") set (SEQAN3_DOXYGEN_PREDEFINED_NDEBUG "") set (SEQAN3_DOXYGEN_ENABLED_SECTIONS "DEV") set (SEQAN3_SHOW_DEV_DOCS "YES") diff --git a/test/documentation/doc_usr/CMakeLists.txt b/test/documentation/doc_usr/CMakeLists.txt index 972c92f09f..0f9c4fe149 100644 --- a/test/documentation/doc_usr/CMakeLists.txt +++ b/test/documentation/doc_usr/CMakeLists.txt @@ -8,7 +8,8 @@ message (STATUS "Configuring user doc.") set (SEQAN3_DOXYGEN_OUTPUT_DIR "${CMAKE_CURRENT_BINARY_DIR}") -set (SEQAN3_DOXYGEN_EXCLUDE_SYMBOLS "") +set (SEQAN3_DOXYGEN_EXCLUDE_SYMBOLS "seqan3::detail seqan3::simd") +set (SEQAN3_DOXYGEN_EXCLUDE_PATTERNS "*/utility/parallel/*.hpp */utility/simd/*.hpp */alignment/pairwise/policy/*.hpp") set (SEQAN3_DOXYGEN_PREDEFINED_NDEBUG "-NDEBUG") #/"" set (SEQAN3_DOXYGEN_ENABLED_SECTIONS "") #/"DEV" set (SEQAN3_SHOW_DEV_DOCS "NO") #/"YES" diff --git a/test/documentation/seqan3_doxygen_cfg.in b/test/documentation/seqan3_doxygen_cfg.in index 892cdefa53..5d893ad7d1 100644 --- a/test/documentation/seqan3_doxygen_cfg.in +++ b/test/documentation/seqan3_doxygen_cfg.in @@ -158,7 +158,7 @@ EXCLUDE = EXCLUDE_SYMLINKS = NO EXCLUDE_PATTERNS = */doc/*.cpp \ */contrib/std/*.hpp \ - */utility/simd/*.hpp + ${SEQAN3_DOXYGEN_EXCLUDE_PATTERNS} EXCLUDE_SYMBOLS = seqan3::contrib \ ${SEQAN3_DOXYGEN_EXCLUDE_SYMBOLS} EXAMPLE_PATH = ${SEQAN3_DOXYGEN_SOURCE_DIR}