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take too much time to run vaquita #39

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masen1991 opened this issue Dec 16, 2020 · 0 comments
Open

take too much time to run vaquita #39

masen1991 opened this issue Dec 16, 2020 · 0 comments

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@masen1991
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masen1991 commented Dec 16, 2020

Hello
i run vaquita on NGS bam file ,and it take two days and still running.
command like this:
vaquita call -r {ref} {bam} >{dir}/vaquita.vcf
i test ,if i use bam file alignment on GRC38 ref,it will take too long time. if i use hg19,it work well so far .
Do u have any idea?

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