diff --git a/recipes/bioconductor-ebseq/build.sh b/recipes/bioconductor-ebseq/build.sh new file mode 100644 index 0000000..c1d1342 --- /dev/null +++ b/recipes/bioconductor-ebseq/build.sh @@ -0,0 +1,11 @@ +#!/bin/bash +mv DESCRIPTION DESCRIPTION.old +grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION +mkdir -p ~/.R +echo -e "CC=$CC +FC=$FC +CXX=$CXX +CXX98=$CXX +CXX11=$CXX +CXX14=$CXX" > ~/.R/Makevars +$R CMD INSTALL --build . \ No newline at end of file diff --git a/recipes/bioconductor-ebseq/meta.yaml b/recipes/bioconductor-ebseq/meta.yaml new file mode 100644 index 0000000..c6b2318 --- /dev/null +++ b/recipes/bioconductor-ebseq/meta.yaml @@ -0,0 +1,48 @@ +{% set version = "1.38.0" %} +{% set name = "EBSeq" %} +{% set bioc = "3.16" %} + +package: + name: 'bioconductor-{{ name|lower }}' + version: '{{ version }}' +source: + url: + - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' + - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz' + - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' + - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' + md5: 3dcbccf3dab22b82b2535991266b3f02 +build: + number: 0 + rpaths: + - lib/R/lib/ + - lib/ + noarch: generic +requirements: + host: + - 'r-base >=4.1,<4.2' + - r-blockmodeling + - r-gplots + - r-testthat + run: + - 'r-base >=4.1,<4.2' + - r-blockmodeling + - r-gplots + - r-testthat +test: + commands: + - '$R -e "library(''{{ name }}'')"' +about: + home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' + license: Artistic-2.0 + summary: 'An R package for gene and isoform differential expression analysis of RNA-seq data' + description: 'Differential Expression analysis at both gene and isoform level using RNA-seq data' +extra: + identifiers: + - biotools:ebseq + - doi:10.1093/bioinformatics/btt087 + parent_recipe: + name: bioconductor-ebseq + path: recipes/bioconductor-ebseq + version: 1.20.0 +