From ed2ba3ed271953a45a8b024e56b777999edde1ff Mon Sep 17 00:00:00 2001
From: Jonathan Manning <jonathan.manning@seqera.io>
Date: Mon, 27 Nov 2023 11:33:36 +0000
Subject: [PATCH] Add gitpod  yml

---
 .gitpod.yml | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 .gitpod.yml

diff --git a/.gitpod.yml b/.gitpod.yml
new file mode 100644
index 0000000..25488dc
--- /dev/null
+++ b/.gitpod.yml
@@ -0,0 +1,19 @@
+image: nfcore/gitpod:latest
+tasks:
+  - name: Update Nextflow and setup pre-commit
+    command: |
+      pre-commit install --install-hooks
+      nextflow self-update
+
+vscode:
+  extensions: # based on nf-core.nf-core-extensionpack
+    - codezombiech.gitignore # Language support for .gitignore files
+    # - cssho.vscode-svgviewer                 # SVG viewer
+    - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
+    - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
+    - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
+    - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
+    - mechatroner.rainbow-csv # Highlight columns in csv files in different colors
+    # - nextflow.nextflow                      # Nextflow syntax highlighting
+    - oderwat.indent-rainbow # Highlight indentation level
+    - streetsidesoftware.code-spell-checker # Spelling checker for source code