From b64811315c9b288016df8d9cf93fe27fce2bf86f Mon Sep 17 00:00:00 2001 From: Xiaoying Wang Date: Sun, 3 Nov 2024 16:15:51 -0800 Subject: [PATCH 1/4] support python 3.13 --- connectorx-python/Cargo.lock | 34 +- connectorx-python/Cargo.toml | 8 +- connectorx-python/poetry.lock | 1456 +++++++++-------- connectorx-python/pyproject.toml | 2 +- .../src/pandas/pandas_columns/array.rs | 8 + .../src/pandas/pandas_columns/boolean.rs | 4 + .../src/pandas/pandas_columns/bytes.rs | 8 + .../src/pandas/pandas_columns/datetime.rs | 4 + .../src/pandas/pandas_columns/float64.rs | 4 + .../src/pandas/pandas_columns/int64.rs | 4 + .../src/pandas/pandas_columns/mod.rs | 15 + .../src/pandas/pandas_columns/string.rs | 4 + connectorx-python/src/pandas/pystring.rs | 4 + 13 files changed, 856 insertions(+), 699 deletions(-) diff --git a/connectorx-python/Cargo.lock b/connectorx-python/Cargo.lock index 974edc9ebd..c5bd46d2f6 100644 --- a/connectorx-python/Cargo.lock +++ b/connectorx-python/Cargo.lock @@ -2223,6 +2223,12 @@ version = "0.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" +[[package]] +name = "heck" +version = "0.5.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" + [[package]] name = "hermit-abi" version = "0.1.19" @@ -3188,9 +3194,9 @@ dependencies = [ [[package]] name = "numpy" -version = "0.21.0" +version = "0.22.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ec170733ca37175f5d75a5bea5911d6ff45d2cd52849ce98b685394e4f2f37f4" +checksum = "edb929bc0da91a4d85ed6c0a84deaa53d411abfb387fc271124f91bf6b89f14e" dependencies = [ "libc", "ndarray", @@ -4104,15 +4110,15 @@ dependencies = [ [[package]] name = "pyo3" -version = "0.21.2" +version = "0.22.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a5e00b96a521718e08e03b1a622f01c8a8deb50719335de3f60b3b3950f069d8" +checksum = "3d922163ba1f79c04bc49073ba7b32fd5a8d3b76a87c955921234b8e77333c51" dependencies = [ "cfg-if", "indoc", "libc", "memoffset 0.9.1", - "parking_lot 0.12.1", + "once_cell", "portable-atomic", "pyo3-build-config", "pyo3-ffi", @@ -4122,9 +4128,9 @@ dependencies = [ [[package]] name = "pyo3-build-config" -version = "0.21.2" +version = "0.22.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7883df5835fafdad87c0d888b266c8ec0f4c9ca48a5bed6bbb592e8dedee1b50" +checksum = "bc38c5feeb496c8321091edf3d63e9a6829eab4b863b4a6a65f26f3e9cc6b179" dependencies = [ "once_cell", "target-lexicon", @@ -4138,9 +4144,9 @@ checksum = "35ee655adc94166665a1d714b439e27857dd199b947076891d6a17d32d396cde" [[package]] name = "pyo3-ffi" -version = "0.21.2" +version = "0.22.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "01be5843dc60b916ab4dad1dca6d20b9b4e6ddc8e15f50c47fe6d85f1fb97403" +checksum = "94845622d88ae274d2729fcefc850e63d7a3ddff5e3ce11bd88486db9f1d357d" dependencies = [ "libc", "pyo3-build-config", @@ -4148,9 +4154,9 @@ dependencies = [ [[package]] name = "pyo3-macros" -version = "0.21.2" +version = "0.22.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77b34069fc0682e11b31dbd10321cbf94808394c56fd996796ce45217dfac53c" +checksum = "e655aad15e09b94ffdb3ce3d217acf652e26bbc37697ef012f5e5e348c716e5e" dependencies = [ "proc-macro2", "pyo3-macros-backend", @@ -4160,11 +4166,11 @@ dependencies = [ [[package]] name = "pyo3-macros-backend" -version = "0.21.2" +version = "0.22.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "08260721f32db5e1a5beae69a55553f56b99bd0e1c3e6e0a5e8851a9d0f5a85c" +checksum = "ae1e3f09eecd94618f60a455a23def79f79eba4dc561a97324bf9ac8c6df30ce" dependencies = [ - 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true} pyarrow = {version = ">=4", optional = true} -python = ">=3.9,<3.13" +python = ">=3.9,<3.14" [tool.poetry.extras] all = ["dask", "pandas", "modin", "polars", "pyarrow"] diff --git a/connectorx-python/src/pandas/pandas_columns/array.rs b/connectorx-python/src/pandas/pandas_columns/array.rs index 542c381ea8..c887d568d5 100644 --- a/connectorx-python/src/pandas/pandas_columns/array.rs +++ b/connectorx-python/src/pandas/pandas_columns/array.rs @@ -18,6 +18,10 @@ unsafe impl Element for PyList { fn get_dtype_bound(py: Python<'_>) -> Bound<'_, PyArrayDescr> { PyArrayDescr::object_bound(py) } + + fn clone_ref(&self, _py: Python<'_>) -> Self { + Self(self.0.clone()) + } } pub struct ArrayBlock<'a, V> { @@ -37,6 +41,10 @@ impl<'a, V> FromPyObject<'a> for ArrayBlock<'a, V> { _value_type: PhantomData, }) } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a, V> ArrayBlock<'a, V> { diff --git a/connectorx-python/src/pandas/pandas_columns/boolean.rs b/connectorx-python/src/pandas/pandas_columns/boolean.rs index aab01a3e03..b61ed947f5 100644 --- a/connectorx-python/src/pandas/pandas_columns/boolean.rs +++ b/connectorx-python/src/pandas/pandas_columns/boolean.rs @@ -33,6 +33,10 @@ impl<'a> FromPyObject<'a> for BooleanBlock<'a> { )) } } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> BooleanBlock<'a> { diff --git a/connectorx-python/src/pandas/pandas_columns/bytes.rs b/connectorx-python/src/pandas/pandas_columns/bytes.rs index c908e45ed3..b2ba2af358 100644 --- a/connectorx-python/src/pandas/pandas_columns/bytes.rs +++ b/connectorx-python/src/pandas/pandas_columns/bytes.rs @@ -17,6 +17,10 @@ unsafe impl Element for PyBytes { fn get_dtype_bound(py: Python<'_>) -> Bound<'_, PyArrayDescr> { PyArrayDescr::object_bound(py) } + + fn clone_ref(&self, _py: Python<'_>) -> Self { + Self(self.0.clone()) + } } pub struct BytesBlock<'a> { @@ -34,6 +38,10 @@ impl<'a> FromPyObject<'a> for BytesBlock<'a> { buf_size_mb: 16, // in MB }) } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> BytesBlock<'a> { diff --git a/connectorx-python/src/pandas/pandas_columns/datetime.rs b/connectorx-python/src/pandas/pandas_columns/datetime.rs index 1a0fd5ee1d..5374ea39f9 100644 --- a/connectorx-python/src/pandas/pandas_columns/datetime.rs +++ b/connectorx-python/src/pandas/pandas_columns/datetime.rs @@ -21,6 +21,10 @@ impl<'a> FromPyObject<'a> for DateTimeBlock<'a> { let data = unsafe { array.as_array_mut() }; Ok(DateTimeBlock { data }) } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> DateTimeBlock<'a> { diff --git a/connectorx-python/src/pandas/pandas_columns/float64.rs b/connectorx-python/src/pandas/pandas_columns/float64.rs index 7d437bdab0..b3c35ce21b 100644 --- a/connectorx-python/src/pandas/pandas_columns/float64.rs +++ b/connectorx-python/src/pandas/pandas_columns/float64.rs @@ -19,6 +19,10 @@ impl<'a> FromPyObject<'a> for Float64Block<'a> { let data = unsafe { array.as_array_mut() }; Ok(Float64Block { data }) } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> Float64Block<'a> { diff --git a/connectorx-python/src/pandas/pandas_columns/int64.rs b/connectorx-python/src/pandas/pandas_columns/int64.rs index cfdbfd592e..a4a95328d4 100644 --- a/connectorx-python/src/pandas/pandas_columns/int64.rs +++ b/connectorx-python/src/pandas/pandas_columns/int64.rs @@ -30,6 +30,10 @@ impl<'a> FromPyObject<'a> for Int64Block<'a> { )) } } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> Int64Block<'a> { diff --git a/connectorx-python/src/pandas/pandas_columns/mod.rs b/connectorx-python/src/pandas/pandas_columns/mod.rs index fe3c3cf5cc..9f9f653a06 100644 --- a/connectorx-python/src/pandas/pandas_columns/mod.rs +++ b/connectorx-python/src/pandas/pandas_columns/mod.rs @@ -58,3 +58,18 @@ pub fn check_dtype(ob: &PyAny, expected_dtype: &str) -> PyResult<()> { } Ok(()) } + +// pub fn check_bound_dtype<'py>(ob: &pyo3::Bound<'py, PyAny>, expected_dtype: &str) -> PyResult<()> { +// let dtype = ob.getattr(intern!(ob.py(), "dtype"))?.str()?; +// // https://pyo3.rs/main/doc/pyo3/types/struct.pystring#equality +// if dtype != expected_dtype { +// throw!(PyRuntimeError::new_err(format!( +// "expecting ndarray to be '{}' found '{}' at {}:{}", +// expected_dtype, +// dtype, +// file!(), +// line!() +// ))); +// } +// Ok(()) +// } diff --git a/connectorx-python/src/pandas/pandas_columns/string.rs b/connectorx-python/src/pandas/pandas_columns/string.rs index a2783bbc38..6c5d33bd7a 100644 --- a/connectorx-python/src/pandas/pandas_columns/string.rs +++ b/connectorx-python/src/pandas/pandas_columns/string.rs @@ -25,6 +25,10 @@ impl<'a> FromPyObject<'a> for StringBlock<'a> { buf_size_mb: PYSTRING_BUFFER_SIZE, // in MB }) } + + fn extract_bound(ob: &pyo3::Bound<'a, PyAny>) -> PyResult { + Self::extract(ob.clone().into_gil_ref()) + } } impl<'a> StringBlock<'a> { diff --git a/connectorx-python/src/pandas/pystring.rs b/connectorx-python/src/pandas/pystring.rs index e821e81b6c..69135d434c 100644 --- a/connectorx-python/src/pandas/pystring.rs +++ b/connectorx-python/src/pandas/pystring.rs @@ -13,6 +13,10 @@ unsafe impl Element for PyString { fn get_dtype_bound(py: Python<'_>) -> Bound<'_, PyArrayDescr> { PyArrayDescr::object_bound(py) } + + fn clone_ref(&self, _py: Python<'_>) -> Self { + Self(self.0.clone()) + } } #[derive(Clone, Copy, Debug)] From d8cf9879a7bdefafe01682c4abedeace8178417e Mon Sep 17 00:00:00 2001 From: Xiaoying Wang Date: Mon, 4 Nov 2024 09:50:12 -0800 Subject: [PATCH 2/4] update workflow and test --- .github/workflows/ci.yml | 2 +- .github/workflows/release.yml | 10 +++++----- connectorx-python/connectorx/tests/test_polars.py | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 87601c856a..d8f4218acb 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -112,7 +112,7 @@ jobs: container: ubuntu:22.04 strategy: matrix: - python-version: ["3.12"] + python-version: ["3.13"] services: # Label used to access the service container postgres: diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 4226b1d452..ea94e662a1 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -12,7 +12,7 @@ jobs: container: quay.io/pypa/manylinux_2_28_x86_64 strategy: matrix: - python-version: [[39, "3.9"], [310, "3.10"], [311, "3.11"], [312, "3.12"]] + python-version: [[39, "3.9"], [310, "3.10"], [311, "3.11"], [312, "3.12"], [313, "3.13"]] steps: - uses: actions/checkout@v4 @@ -162,7 +162,7 @@ jobs: strategy: matrix: os: ["windows-latest", "macos-13"] - python-version: ["3.9", "3.10", "3.11", "3.12"] + python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] include: - os: "macos-13" features: "--features integrated-auth-gssapi" @@ -226,7 +226,7 @@ jobs: runs-on: macos-latest strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] + python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v4 @@ -288,7 +288,7 @@ jobs: needs: [win-and-mac, linux] strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] + python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] os: [macos-13, ubuntu-latest, windows-latest] steps: - uses: actions/checkout@v4 @@ -311,7 +311,7 @@ jobs: needs: [apple-arm] strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] + python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] os: [macos-latest] steps: - uses: actions/checkout@v4 diff --git a/connectorx-python/connectorx/tests/test_polars.py b/connectorx-python/connectorx/tests/test_polars.py index f748fcb43c..6274db6018 100644 --- a/connectorx-python/connectorx/tests/test_polars.py +++ b/connectorx-python/connectorx/tests/test_polars.py @@ -13,7 +13,7 @@ def postgres_url() -> str: return conn -def test_modin(postgres_url: str) -> None: +def test_polars(postgres_url: str) -> None: query = "SELECT * FROM test_table" df = read_sql( postgres_url, @@ -35,4 +35,4 @@ def test_modin(postgres_url: str) -> None: ) df = df.sort('test_int') - assert df.frame_equal(expected, null_equal=True) + assert df.equals(expected, null_equal=True) From 2e6d5392173f200bcf9430cd20dc88cf051ce474 Mon Sep 17 00:00:00 2001 From: Xiaoying Wang Date: Mon, 4 Nov 2024 10:06:36 -0800 Subject: [PATCH 3/4] update scripts --- .github/workflows/import-test.yml | 2 +- .github/workflows/release.yml | 10 +-- connectorx-python/poetry.lock | 115 ++++++++++++++++-------------- connectorx-python/pyproject.toml | 10 +-- 4 files changed, 72 insertions(+), 65 deletions(-) diff --git a/.github/workflows/import-test.yml b/.github/workflows/import-test.yml index b01c9ef9fd..d003005f1b 100644 --- a/.github/workflows/import-test.yml +++ b/.github/workflows/import-test.yml @@ -18,7 +18,7 @@ jobs: strategy: matrix: os: [ubuntu-latest, macos-10.15, windows-latest] - python-version: ["3.7", "3.8", "3.9", "3.10"] + python-version: ["3.10", "3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v4 diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index ea94e662a1..1a39d64cbd 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -12,7 +12,7 @@ jobs: container: quay.io/pypa/manylinux_2_28_x86_64 strategy: matrix: - python-version: [[39, "3.9"], [310, "3.10"], [311, "3.11"], [312, "3.12"], [313, "3.13"]] + python-version: [[310, "3.10"], [311, "3.11"], [312, "3.12"], [313, "3.13"]] steps: - uses: actions/checkout@v4 @@ -162,7 +162,7 @@ jobs: strategy: matrix: os: ["windows-latest", "macos-13"] - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13"] include: - os: "macos-13" features: "--features integrated-auth-gssapi" @@ -226,7 +226,7 @@ jobs: runs-on: macos-latest strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13"] steps: - uses: actions/checkout@v4 @@ -288,7 +288,7 @@ jobs: needs: [win-and-mac, linux] strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13"] os: [macos-13, ubuntu-latest, windows-latest] steps: - uses: actions/checkout@v4 @@ -311,7 +311,7 @@ jobs: needs: [apple-arm] strategy: matrix: - python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] + python-version: ["3.10", "3.11", "3.12", "3.13"] os: [macos-latest] steps: - uses: actions/checkout@v4 diff --git a/connectorx-python/poetry.lock b/connectorx-python/poetry.lock index 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