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Query GenBank #5

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shamseen opened this issue May 11, 2021 · 1 comment · Fixed by #13
Open
2 of 3 tasks

Query GenBank #5

shamseen opened this issue May 11, 2021 · 1 comment · Fixed by #13
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External APIs

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shamseen commented May 11, 2021 •
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  • Return value
  • Update documentation
  • Search parameters: keywords, sequence record ID, study ID
@shamseen shamseen added this to the External APIs milestone May 11, 2021
@shamseen shamseen added the blocked Cannot progress without resolving other issues label May 11, 2021
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GenBank docs:
https://www.ncbi.nlm.nih.gov/books/NBK25500/#chapter1.Searching_a_Database

@shamseen shamseen added the research Needs more info to proceed label May 12, 2021
@shamseen shamseen self-assigned this May 13, 2021
shamseen added a commit that referenced this issue May 13, 2021
@shamseen
trimmed models based on DNA API docs #5 #6
b9a27f8
shamseen added a commit that referenced this issue May 14, 2021
@shamseen
ENA: fixed search; used predefined rule in GET #5
29a64bd
@shamseen shamseen removed blocked Cannot progress without resolving other issues research Needs more info to proceed labels May 14, 2021
shamseen added a commit that referenced this issue May 14, 2021
@shamseen
using unique rule ID instead #5
678fcf9
@shamseen shamseen linked a pull request May 19, 2021 that will close this issue
Calls ENA search endpoint via fixed search #13
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shamseen added a commit that referenced this issue May 19, 2021
@shamseen
search ENA data by study id, seq id, or keyword #5
2f58987
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Calls ENA search endpoint via fixed search shamseen/pngcat-api
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