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Long reads support #113
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Hi, sorry it might not be that obvious. Run Hecatomb like so: |
Thanks for the reply. Can I apply contigs to conduct partial hecatmob pipeline? |
Sure! If you just want the read-annotations without the assembly, just add 'read_annotations' to specify the target output files: |
Thanks for the reply! Just complete the read_annotations option, but can I apply assembled contigs into hecatomb process? |
Not easily. It would probably be easier to manually run mmseqs searches of the contigs against the secondary databases. |
Hi,
Already complete the test. But failed with path to pacbio hifi.fastq.gz and also a tsv noted sample/file path. Would encounter error like below "Error in rule pool_paired_unmapped_R2: jobid: 9". Please kindly provide option to proceed. Thanks!
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