diff --git a/README.md b/README.md
index fb2de3d..f4dcf75 100644
--- a/README.md
+++ b/README.md
@@ -115,13 +115,7 @@ codemapper https://github.com/shaneholloman/ansible-role-apache
 
 ## TODO
 
-- [x] Add support for creating directly from repo url
-- [ ] Implement a clever way to include images in the artifacts, maybe base64 encode them directly to the markdown file, but that could chew thru tokens at prompt time? Suggestions?
-- [ ] Add support for other Git hosting services (e.g., GitLab, Bitbucket)
-- [ ] Implement a progress indicator for cloning/analyzing large repositories
-- [x] Table of Contents in some cases needs improvement. We may add some ignores
-    - [ ] For TOC consider a more robust library like `md_toc` no user complaints yet
-- [x] Use changelog.md for version history
+![codemapper todo list is here](./notes/todo.md)
 
 ## Contributing
 
diff --git a/notes/complete-pypi-publication-guide.md b/notes/pypi.md
similarity index 98%
rename from notes/complete-pypi-publication-guide.md
rename to notes/pypi.md
index 7260281..aead25d 100644
--- a/notes/complete-pypi-publication-guide.md
+++ b/notes/pypi.md
@@ -135,6 +135,8 @@ git pull origin main
 
 11.7. Rebuild the package:
 
+I typically delete to the old build files before rebuilding.
+
 ```bash
 python setup.py sdist bdist_wheel
 ```
diff --git a/notes/todo.md b/notes/todo.md
new file mode 100644
index 0000000..8221749
--- /dev/null
+++ b/notes/todo.md
@@ -0,0 +1,42 @@
+# CodeMapper TODO List
+
+## Core Functionality
+
+- [x] Implement direct repository URL analysis
+- [ ] Expand Git hosting service support (GitLab, Bitbucket)
+- [ ] Develop progress indicator for large repository processing
+- [ ] Enable custom branch selection
+- [ ] Implement intelligent repository categorization
+  - [ ] Deterministic analysis
+  - [ ] AI-powered analysis
+  - [ ] Add option to update original repo with categories (for owners)
+
+## Documentation
+
+- [x] Utilize changelog.md for version tracking
+- [ ] Create separate `*_docmap.md` for documentation directories
+- [ ] Add repository source information to output file header
+
+## AI Integration
+
+- [ ] Implement AI-generated alt text for images
+- [ ] Explore base64 image encoding and embedding
+
+## Output Formats
+
+- [x] Markdown (default)
+- [ ] JSON
+- [ ] YAML
+- [ ] reStructuredText
+- [ ] AsciiDoc
+
+## User Experience
+
+- [ ] Develop comprehensive help command and menu
+- [ ] Enhance Table of Contents generation
+  - [ ] Consider using `md_toc` library for robustness
+- [ ] EPIC: Introduce Mermaid flow chart option for code execution flow visualization
+
+## File Handling
+
+- [x] Generate `*_codemap.md` for file contents and directory structure
diff --git a/src/codemapper/__init__.py b/src/codemapper/__init__.py
index b6449c8..53ceb90 100644
--- a/src/codemapper/__init__.py
+++ b/src/codemapper/__init__.py
@@ -6,6 +6,6 @@
 creating detailed Markdown documentation of their structure and contents.
 """
 
-__version__ = "3.2.3"
+__version__ = "3.3.0"
 
 # Any other necessary imports or package-level code can go here