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MANIFEST.bak
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.cirrus_disabled.yml
bin/Biodiverse_icon.ico
bin/BiodiverseGUI.pl
bin/load_and_randomise.pl
bin/load_and_randomise_wrapper.pl
bin/plot_correlogram.R
bin/reintegrate_basedatas_post_rand.pl
bin/run_randomisation.pl
bin/ui/dlgClose.ui
bin/ui/dlgDuplicate.ui
bin/ui/dlgExport.ui
bin/ui/dlgGroupsLabels.ui
bin/ui/dlgImport1.ui
bin/ui/dlgImportParameters.ui
bin/ui/dlgIndex.ui
bin/ui/dlgReorderColumns.ui
bin/ui/dlgRunExclusions.ui
bin/ui/dlgYesNoCancel.ui
bin/ui/drag-resize.png
bin/ui/hboxClusteringLabel.ui
bin/ui/hboxClusteringPage.ui
bin/ui/hboxLabelsLabel.ui
bin/ui/hboxLabelsPage.ui
bin/ui/hboxOutputsLabel.ui
bin/ui/hboxOutputsPage.ui
bin/ui/hboxRandomiseLabel.ui
bin/ui/hboxSpatialLabel.ui
bin/ui/hboxSpatialPage.ui
bin/ui/OpenWithName.ui
bin/ui/selector.png
bin/ui/strip_redundant_text.pl
bin/ui/vboxRandomisePage.ui
bin/ui/wndCellPopup.ui
bin/ui/wndMain.ui
bin/ui/wndOverlays.ui
biodiverse.iml
Biodiverse_extensions.txt
BiodiverseGUI.bat
cpanfile
csvcheck.pl
data/coastline_lamberts.dbf
data/coastline_lamberts.prj
data/coastline_lamberts.sbn
data/coastline_lamberts.sbx
data/coastline_lamberts.shp
data/coastline_lamberts.shp.xml
data/coastline_lamberts.shx
data/example_data_empty_gps.bps
data/example_data_x64.bds
data/Example_label_remap.txt
data/example_matrix.bms
data/Example_matrix.txt
data/Example_matrix_sparse.txt
data/Example_numeric_data.txt
data/example_project.bps
data/Example_site_data.csv
data/Example_site_data.dbf
data/Example_site_data.prj
data/Example_site_data.sbn
data/Example_site_data.sbx
data/Example_site_data.shp
data/Example_site_data.shx
data/Example_site_data_matrix_form.csv
data/Example_site_data_unicode.txt
data/example_tree.bts
data/Example_tree.nex
data/Example_tree_remap.txt
data/Example_tree_with_colours.nex
data/gp_props.csv
data/Readme.txt
data/tree_with_nonmatching_names.nex
example_scripts/add_matrix_to_basedata.pl
example_scripts/aggregate_env_data_table.pl
example_scripts/collapse_trees_in_nexus.pl
example_scripts/create_correlogram_data.pl
example_scripts/duplicate_and_remap_labels.pl
example_scripts/example_PD.pl
example_scripts/export_all_spatial_outputs_from_basedata.pl
example_scripts/export_spatial_many_basedatas.pl
example_scripts/import_rasters_and_analyse.pl
example_scripts/import_rasters_and_save.pl
example_scripts/run_many_clusters_and_export_to_nexus.pl
example_scripts/run_num_labels.pl
example_scripts/use_label_ranges_as_spatial_conditions.pl
Installation.txt
lib/App/Biodiverse.pm
lib/Biodiverse/BaseData.pm
lib/Biodiverse/BaseData/Exclusions.pm
lib/Biodiverse/BaseData/Import.pm
lib/Biodiverse/BaseData/ManageOutputs.pm
lib/Biodiverse/BaseStruct.pm
lib/Biodiverse/BaseStruct/Export.pm
lib/Biodiverse/Cluster.pm
lib/Biodiverse/Common.pm
lib/Biodiverse/Config.pm
lib/Biodiverse/Config/PARModules.pm
lib/Biodiverse/ElementProperties.pm
lib/Biodiverse/Exception.pm
lib/Biodiverse/GUI/BasedataImport.pm
lib/Biodiverse/GUI/Callbacks.pm
lib/Biodiverse/GUI/CellPopup.pm
lib/Biodiverse/GUI/DeleteElementProperties.pm
lib/Biodiverse/GUI/Dendrogram.pm
lib/Biodiverse/GUI/Exclusions.pm
lib/Biodiverse/GUI/Export.pm
lib/Biodiverse/GUI/Grid.pm
lib/Biodiverse/GUI/GUIManager.pm
lib/Biodiverse/GUI/Help.pm
lib/Biodiverse/GUI/Legend.pm
lib/Biodiverse/GUI/Manager/BaseDatas.pm
lib/Biodiverse/GUI/MatrixGrid.pm
lib/Biodiverse/GUI/MatrixImport.pm
lib/Biodiverse/GUI/OpenDialog.pm
lib/Biodiverse/GUI/Overlays.pm
lib/Biodiverse/GUI/ParametersTable.pm
lib/Biodiverse/GUI/PhylogenyImport.pm
lib/Biodiverse/GUI/Popup.pm
lib/Biodiverse/GUI/PopupObject.pm
lib/Biodiverse/GUI/ProgressDialog.pm
lib/Biodiverse/GUI/Project.pm
lib/Biodiverse/GUI/RemapGUI.pm
lib/Biodiverse/GUI/SpatialParams.pm
lib/Biodiverse/GUI/Tabs/CalculationsTree.pm
lib/Biodiverse/GUI/Tabs/Clustering.pm
lib/Biodiverse/GUI/Tabs/Labels.pm
lib/Biodiverse/GUI/Tabs/Outputs.pm
lib/Biodiverse/GUI/Tabs/Randomise.pm
lib/Biodiverse/GUI/Tabs/RegionGrower.pm
lib/Biodiverse/GUI/Tabs/Spatial.pm
lib/Biodiverse/GUI/Tabs/SpatialMatrix.pm
lib/Biodiverse/GUI/Tabs/Tab.pm
lib/Biodiverse/GUI/YesNoCancel.pm
lib/Biodiverse/Index.pm
lib/Biodiverse/Indices.pm
lib/Biodiverse/Indices/Endemism.pm
lib/Biodiverse/Indices/GroupProperties.pm
lib/Biodiverse/Indices/Hierarchical_Labels.pm
lib/Biodiverse/Indices/Indices.pm
lib/Biodiverse/Indices/LabelCounts.pm
lib/Biodiverse/Indices/LabelProperties.pm
lib/Biodiverse/Indices/LabelPropertiesRangeWtd.pm
lib/Biodiverse/Indices/Matrix_Indices.pm
lib/Biodiverse/Indices/Numeric_Labels.pm
lib/Biodiverse/Indices/PhyloCom.pm
lib/Biodiverse/Indices/Phylogenetic.pm
lib/Biodiverse/Indices/Phylogenetic/RefAlias.pm
lib/Biodiverse/Indices/PhylogeneticRelative.pm
lib/Biodiverse/Indices/PhylogeneticRelative/RefAlias.pm
lib/Biodiverse/Indices/Rarity.pm
lib/Biodiverse/Indices/RichnessEstimation.pm
lib/Biodiverse/Indices/RWTurnover.pm
lib/Biodiverse/Matrix.pm
lib/Biodiverse/Matrix/Base.pm
lib/Biodiverse/Matrix/LowMem.pm
lib/Biodiverse/Metadata.pm
lib/Biodiverse/Metadata/BaseStruct.pm
lib/Biodiverse/Metadata/Export.pm
lib/Biodiverse/Metadata/Indices.pm
lib/Biodiverse/Metadata/Parameter.pm
lib/Biodiverse/Metadata/Randomisation.pm
lib/Biodiverse/Metadata/SpatialConditions.pm
lib/Biodiverse/Progress.pm
lib/Biodiverse/Randomise.pm
lib/Biodiverse/Randomise/IndependentSwaps.pm
lib/Biodiverse/ReadNexus.pm
lib/Biodiverse/RegionGrower.pm
lib/Biodiverse/Remap.pm
lib/Biodiverse/RemapGuesser.pm
lib/Biodiverse/Spatial.pm
lib/Biodiverse/SpatialConditions.pm
lib/Biodiverse/SpatialConditions/DefQuery.pm
lib/Biodiverse/SpatialConditions/SpCalc.pm
lib/Biodiverse/SpatialParams.pm
lib/Biodiverse/SpatialParams/DefQuery.pm
lib/Biodiverse/Statistics.pm
lib/Biodiverse/Tree.pm
lib/Biodiverse/TreeNode.pm
lib/Biodiverse/TreeNode/BootstrapBlock.pm
lib/Biodiverse/Utilities.pm
lib/BiodiverseX/Indices/IEI.pm
lib/BiodiverseX/Indices/Phylogenetic.pm
LICENSE
Makefile.PL
MANIFEST
MANIFEST.SKIP
README.md
run_yath.sh
t/00-load.t
t/01-clone-save-reload.t
t/01-csv-guesswork.t
t/02-unicode-file-names.t
t/10-ElementProperties.t
t/11-BaseData-exclusions.t
t/11-BaseData-group-props-from-raster.t
t/11-BaseData-import-feature-data.t
t/11-BaseData-import-spreadsheet.t
t/11-BaseData-reintegrate-after-rand.t
t/11-BaseData-reorder-axes.t
t/11-BaseData.t
t/12-BaseStruct-export.t
t/12-BaseStruct.t
t/13-BootstrapBlock.t
t/13-Tree.t
t/20-Biodiverse-Statistics-descr.t
t/20-Biodiverse-Statistics.t
t/21-ReadNexus.t
t/22-SpatialConditions-block-select.t
t/22-SpatialConditions-main.t
t/22-SpatialConditions-metadata.t
t/22-SpatialConditions-rectangle.t
t/22-SpatialConditions-side-in-line.t
t/22-SpatialConditions-side-left.t
t/22-SpatialConditions-side-right.t
t/22-SpatialConditions-sp-output-list-value.t
t/22-SpatialConditions-sp-points-in-clusters.t
t/22-SpatialConditions2.t
t/22-SpatialConditions3.t
t/22-SpatialConditions4.t
t/22-SpatialConditions5.t
t/23-Indices.t
t/24-Indices-element-properties-group.t
t/24-Indices-element-properties-label-gistar-range-wtd.t
t/24-Indices-element-properties-label.t
t/24-Indices-endemism.t
t/24-Indices-hierarchical-labels.t
t/24-Indices-inter-event-interval-statistics.t
t/24-Indices-lists-and-counts-rank-relative-abundances.t
t/24-Indices-lists-and-counts.t
t/24-Indices-matrix.t
t/24-Indices-numeric-labels.t
t/24-Indices-phylocom-nri-nti.t
t/24-Indices-phylocom.t
t/24-Indices-phylogenetic-local-PD.t
t/24-Indices-phylogenetic-pd-endemism.t
t/24-Indices-phylogenetic-relative.t
t/24-Indices-phylogenetic-turnover.t
t/24-Indices-phylogenetic.t
t/24-Indices-rarity.t
t/24-Indices-richness-estimators.t
t/24-Indices-RW-turnover.t
t/24-Indices-taxonomic-dissimilarity-and-comparison.t
t/24-Indices-taxonomic-distinctness.t
t/24-Indices-turnover-with-empty-groups.t
t/25-Matrix.t
t/26-Cluster.t
t/26-Cluster2.t
t/26-RegionGrower.t
t/27-Spatial.t
t/28-Randomisation.t
t/28-Randomisation2.t
t/29-CANAPE.t
t/30-Progress.t
t/31-Remap.t
t/31-RemapGuesser.t
t/aed.bps
t/aed.nwk
t/AED_data.csv
t/AED_data.xlsx
t/data/años.txt
t/data/años_mx.txt
t/data/años_mx_sparse.txt
t/data/años.txt
t/data/años_mx.txt
t/data/años_mx_sparse.txt
't/data/polygon data.CPG'
't/data/polygon data.dbf'
't/data/polygon data.prj'
't/data/polygon data.qix'
't/data/polygon data.shp'
't/data/polygon data.shp.xml'
't/data/polygon data.shx'
t/data/polygon_data_single_part.cpg
t/data/polygon_data_single_part.dbf
t/data/polygon_data_single_part.prj
t/data/polygon_data_single_part.sbn
t/data/polygon_data_single_part.sbx
t/data/polygon_data_single_part.shp
t/data/polygon_data_single_part.shp.xml
t/data/polygon_data_single_part.shx
t/data/polygon_data_single_partx.cpg
t/data/polygon_data_single_partx.dbf
t/data/polygon_data_single_partx.prj
t/data/polygon_data_single_partx.sbn
t/data/polygon_data_single_partx.sbx
t/data/polygon_data_single_partx.shp
t/data/polygon_data_single_partx.shp.xml
t/data/polygon_data_single_partx.shx
't/data/polyline data.cpg'
't/data/polyline data.dbf'
't/data/polyline data.prj'
't/data/polyline data.qix'
't/data/polyline data.shp'
't/data/polyline data.shp.xml'
't/data/polyline data.shx'
t/data/rast_nodata_is_nan.tfw
t/data/rast_nodata_is_nan.tif
t/data/test_spreadsheet_import.ods
t/data/test_spreadsheet_import.xls
t/data/test_spreadsheet_import.xlsx
t/data/test_spreadsheet_import_dms_coords.xlsx
t/data/test_spreadsheet_import_matrix_form.xlsx
t/dms_latlon.dbf
t/dms_latlon.shp
t/dms_latlon.shx
t/EstimateS_data.txt
t/ex_rasters/ex
t/ex_rasters/ex_bazungalah%20smith.asc
t/ex_rasters/ex_bazungalah%20smith.flt
t/ex_rasters/ex_bazungalah%20smith.hdr
t/ex_rasters/ex_ers
t/ex_rasters/ex_g1%3Asp1.asc
t/ex_rasters/ex_g1%3Asp1.flt
t/ex_rasters/ex_g1%3Asp1.hdr
t/ex_rasters/ex_g2%3Asp2.asc
t/ex_rasters/ex_g2%3Asp2.flt
t/ex_rasters/ex_g2%3Asp2.hdr
t/ex_rasters/ex_g2%3Asp3.asc
t/ex_rasters/ex_g2%3Asp3.flt
t/ex_rasters/ex_g2%3Asp3.hdr
t/ex_rasters/example_bd.dump
t/ex_rasters/example_small.bds
t/lib/Biodiverse/TestHelpers.pm
t/lib/Utils.pm
t/README.txt
xt/.perlcritic-history
xt/00-roundtrip-self-referential-structure.t
xt/01-has-versions.t
xt/02-versions-all-same.t
xt/03-has-pod.t
xt/04-pod-coverage.t
xt/05-manifest.t
xt/06-critic.t
xt/07-notabs.t
xt/09-use-strict.t
xt/changes-format.t
xt/README.txt