infectious_inflammation.yaml

pattern_name: infectious_inflammation

pattern_iri: http://purl.obolibrary.org/obo/mondo/patterns/infectious_inflammation.yaml

description: '

  This combines the [infectious disease by agent pattern](https://github.com/monarch-initiative/mondo/blob/master/src/patterns/dosdp-patterns/infectious_disease_by_agent.yaml)
  and the [inflammatory disease by site](https://github.com/monarch-initiative/mondo/blob/master/src/patterns/dosdp-patterns/inflammatory_disease_by_site.yaml)
  pattern.

  Examples: [bacterial endocarditis (disease)](http://purl.obolibrary.org/obo/MONDO_0006669),
  [fungal gastritis](http://purl.obolibrary.org/obo/MONDO_0002843)'

contributors:
- https://orcid.org/0000-0002-6601-2165
- https://orcid.org/0000-0001-5208-3432

classes:
  disease: MONDO:0000001
  organism: NCBITaxon:1
  anatomical structure: UBERON:0000061
  infectious disease: MONDO:0005550

relations:
  disease has inflammation site: RO:0004027
  realized in response to stimulus: RO:0004028

annotationProperties:
  exact_synonym: oio:hasExactSynonym
  related_synonym: oio:hasRelatedSynonym

vars:
  location: '''anatomical structure'''
  agent: '''organism'''

name:
  text: inflammation of %s due to %s
  vars:
  - location
  - agent

annotations:
- annotationProperty: exact_synonym
  text: '%s %s inflammation'
  vars:
  - location
  - agent

def:
  text: An inflammatory disease involving a pathogenic inflammatory response in the
    %s caused by infection with %s.
  vars:
  - location
  - agent

equivalentTo:
  text: '''infectious disease'' and ''disease has inflammation site'' some %s and
    ''realized in response to stimulus'' some %s'
  vars:
  - location
  - agent