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Makefile.old
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Makefile.old
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# This Makefile is for the diffReps extension to perl.
#
# It was generated automatically by MakeMaker version
# 6.57_05 (Revision: 65705) from the contents of
# Makefile.PL. Don't edit this file, edit Makefile.PL instead.
#
# ANY CHANGES MADE HERE WILL BE LOST!
#
# MakeMaker ARGV: ()
#
# MakeMaker Parameters:
# ABSTRACT => q[Detecting differential chromatin modification sites from ChIP-seq data]
# AUTHOR => [q[Li Shen <[email protected]>]]
# BUILD_REQUIRES => { }
# EXE_FILES => [q[bin/diffReps.pl], q[bin/elandsorted2bed.pl], q[bin/export2sorted.pl], q[bin/rmdup_sorted_bed.pl], q[bin/sam2bed.pl], q[bin/findHotspots.pl], q[bin/refgene_getnearestgene], q[bin/region_analysis.pl]]
# NAME => q[diffReps]
# PREREQ_PM => { Parallel::ForkManager=>q[0], Statistics::TTest=>q[0], Time::HiRes=>q[0], Math::CDF=>q[0] }
# VERSION_FROM => q[bin/diffReps.pl]
# --- MakeMaker post_initialize section:
# --- MakeMaker const_config section:
# These definitions are from config.sh (via /usr/lib/perl/5.14/Config.pm).
# They may have been overridden via Makefile.PL or on the command line.
AR = ar
CC = cc
CCCDLFLAGS = -fPIC
CCDLFLAGS = -Wl,-E
DLEXT = so
DLSRC = dl_dlopen.xs
EXE_EXT =
FULL_AR = /usr/bin/ar
LD = cc
LDDLFLAGS = -shared -O2 -g -L/usr/local/lib -fstack-protector
LDFLAGS = -fstack-protector -L/usr/local/lib
LIBC =
LIB_EXT = .a
OBJ_EXT = .o
OSNAME = linux
OSVERS = 2.6.42-37-generic
RANLIB = :
SITELIBEXP = /usr/local/share/perl/5.14.2
SITEARCHEXP = /usr/local/lib/perl/5.14.2
SO = so
VENDORARCHEXP = /usr/lib/perl5
VENDORLIBEXP = /usr/share/perl5
# --- MakeMaker constants section:
AR_STATIC_ARGS = cr
DIRFILESEP = /
DFSEP = $(DIRFILESEP)
NAME = diffReps
NAME_SYM = diffReps
VERSION = 1.55.4
VERSION_MACRO = VERSION
VERSION_SYM = 1_55_4
DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\"
XS_VERSION = 1.55.4
XS_VERSION_MACRO = XS_VERSION
XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\"
INST_ARCHLIB = blib/arch
INST_SCRIPT = blib/script
INST_BIN = blib/bin
INST_LIB = blib/lib
INST_MAN1DIR = blib/man1
INST_MAN3DIR = blib/man3
MAN1EXT = 1p
MAN3EXT = 3pm
INSTALLDIRS = site
INSTALL_BASE = /home/lishen/perl5
DESTDIR =
PREFIX = $(INSTALL_BASE)
INSTALLPRIVLIB = $(INSTALL_BASE)/lib/perl5
DESTINSTALLPRIVLIB = $(DESTDIR)$(INSTALLPRIVLIB)
INSTALLSITELIB = $(INSTALL_BASE)/lib/perl5
DESTINSTALLSITELIB = $(DESTDIR)$(INSTALLSITELIB)
INSTALLVENDORLIB = $(INSTALL_BASE)/lib/perl5
DESTINSTALLVENDORLIB = $(DESTDIR)$(INSTALLVENDORLIB)
INSTALLARCHLIB = $(INSTALL_BASE)/lib/perl5/x86_64-linux-gnu-thread-multi
DESTINSTALLARCHLIB = $(DESTDIR)$(INSTALLARCHLIB)
INSTALLSITEARCH = $(INSTALL_BASE)/lib/perl5/x86_64-linux-gnu-thread-multi
DESTINSTALLSITEARCH = $(DESTDIR)$(INSTALLSITEARCH)
INSTALLVENDORARCH = $(INSTALL_BASE)/lib/perl5/x86_64-linux-gnu-thread-multi
DESTINSTALLVENDORARCH = $(DESTDIR)$(INSTALLVENDORARCH)
INSTALLBIN = $(INSTALL_BASE)/bin
DESTINSTALLBIN = $(DESTDIR)$(INSTALLBIN)
INSTALLSITEBIN = $(INSTALL_BASE)/bin
DESTINSTALLSITEBIN = $(DESTDIR)$(INSTALLSITEBIN)
INSTALLVENDORBIN = $(INSTALL_BASE)/bin
DESTINSTALLVENDORBIN = $(DESTDIR)$(INSTALLVENDORBIN)
INSTALLSCRIPT = $(INSTALL_BASE)/bin
DESTINSTALLSCRIPT = $(DESTDIR)$(INSTALLSCRIPT)
INSTALLSITESCRIPT = $(INSTALL_BASE)/bin
DESTINSTALLSITESCRIPT = $(DESTDIR)$(INSTALLSITESCRIPT)
INSTALLVENDORSCRIPT = $(INSTALL_BASE)/bin
DESTINSTALLVENDORSCRIPT = $(DESTDIR)$(INSTALLVENDORSCRIPT)
INSTALLMAN1DIR = $(INSTALL_BASE)/man/man1
DESTINSTALLMAN1DIR = $(DESTDIR)$(INSTALLMAN1DIR)
INSTALLSITEMAN1DIR = $(INSTALL_BASE)/man/man1
DESTINSTALLSITEMAN1DIR = $(DESTDIR)$(INSTALLSITEMAN1DIR)
INSTALLVENDORMAN1DIR = $(INSTALL_BASE)/man/man1
DESTINSTALLVENDORMAN1DIR = $(DESTDIR)$(INSTALLVENDORMAN1DIR)
INSTALLMAN3DIR = $(INSTALL_BASE)/man/man3
DESTINSTALLMAN3DIR = $(DESTDIR)$(INSTALLMAN3DIR)
INSTALLSITEMAN3DIR = $(INSTALL_BASE)/man/man3
DESTINSTALLSITEMAN3DIR = $(DESTDIR)$(INSTALLSITEMAN3DIR)
INSTALLVENDORMAN3DIR = $(INSTALL_BASE)/man/man3
DESTINSTALLVENDORMAN3DIR = $(DESTDIR)$(INSTALLVENDORMAN3DIR)
PERL_LIB = /usr/share/perl/5.14
PERL_ARCHLIB = /usr/lib/perl/5.14
LIBPERL_A = libperl.a
FIRST_MAKEFILE = Makefile
MAKEFILE_OLD = Makefile.old
MAKE_APERL_FILE = Makefile.aperl
PERLMAINCC = $(CC)
PERL_INC = /usr/lib/perl/5.14/CORE
PERL = /usr/bin/perl
FULLPERL = /usr/bin/perl
ABSPERL = $(PERL)
PERLRUN = $(PERL)
FULLPERLRUN = $(FULLPERL)
ABSPERLRUN = $(ABSPERL)
PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
PERL_CORE = 0
PERM_DIR = 755
PERM_RW = 644
PERM_RWX = 755
MAKEMAKER = /usr/share/perl/5.14/ExtUtils/MakeMaker.pm
MM_VERSION = 6.57_05
MM_REVISION = 65705
# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle).
# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle)
# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar)
# DLBASE = Basename part of dynamic library. May be just equal BASEEXT.
MAKE = make
FULLEXT = diffReps
BASEEXT = diffReps
PARENT_NAME =
DLBASE = $(BASEEXT)
VERSION_FROM = bin/diffReps.pl
OBJECT =
LDFROM = $(OBJECT)
LINKTYPE = dynamic
BOOTDEP =
# Handy lists of source code files:
XS_FILES =
C_FILES =
O_FILES =
H_FILES =
MAN1PODS =
MAN3PODS = lib/MyBioinfo/Common.pm \
lib/MyBioinfo/GTF.pm \
lib/MyBioinfo/Math.pm \
lib/MyBioinfo/NBTest.pm \
lib/MyShortRead/ChromBed.pm \
lib/MyShortRead/MyShortRead.pm \
lib/MyShortRead/SRBed.pm \
lib/PJ/Database/Root.pm \
lib/PJ/Genome.pm \
lib/diffReps/ChromaModSite.pm \
lib/diffReps/DiffRes.pm
# Where is the Config information that we are using/depend on
CONFIGDEP = $(PERL_ARCHLIB)$(DFSEP)Config.pm $(PERL_INC)$(DFSEP)config.h
# Where to build things
INST_LIBDIR = $(INST_LIB)
INST_ARCHLIBDIR = $(INST_ARCHLIB)
INST_AUTODIR = $(INST_LIB)/auto/$(FULLEXT)
INST_ARCHAUTODIR = $(INST_ARCHLIB)/auto/$(FULLEXT)
INST_STATIC =
INST_DYNAMIC =
INST_BOOT =
# Extra linker info
EXPORT_LIST =
PERL_ARCHIVE =
PERL_ARCHIVE_AFTER =
TO_INST_PM = lib/MyBioinfo/Common.pm \
lib/MyBioinfo/GTF.pm \
lib/MyBioinfo/Math.pm \
lib/MyBioinfo/NBTest.pm \
lib/MyShortRead/ChromBed.pm \
lib/MyShortRead/Fastq.pm \
lib/MyShortRead/GenomeIntervalList.pm \
lib/MyShortRead/MyShortRead.pm \
lib/MyShortRead/SRBed.pm \
lib/PJ/Database/Root.pm \
lib/PJ/Database/hg19/hg19.RefSeq.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.genedeserts.bed \
lib/PJ/Database/hg19/hg19.pericentromeres.bed \
lib/PJ/Database/hg19/hg19.subtelomeres.bed \
lib/PJ/Database/mm9/mm9.RefSeq.refFlat.cisgenome.txt \
lib/PJ/Database/mm9/mm9.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/mm9/mm9.genedeserts.bed \
lib/PJ/Database/mm9/mm9.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.subtelomeres.bed \
lib/PJ/Database/rn4/rn4.RefSeq.refFlat.cisgenome.txt \
lib/PJ/Database/rn4/rn4.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/rn4/rn4.genedeserts.bed \
lib/PJ/Database/rn4/rn4.pericentromeres.bed \
lib/PJ/Database/rn4/rn4.subtelomeres.bed \
lib/PJ/Genome.pm \
lib/PJ/R.pm \
lib/diffReps/ChromaModSite.pm \
lib/diffReps/DiffRes.pm \
lib/gtest_externalR/g.test.p.r \
lib/gtest_externalR/g.test.r
PM_TO_BLIB = lib/PJ/Database/rn4/rn4.RefSeq.refFlat.cisgenome.txt \
blib/lib/PJ/Database/rn4/rn4.RefSeq.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.pericentromeres.bed \
blib/lib/PJ/Database/hg19/hg19.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.pericentromeres.bed \
blib/lib/PJ/Database/mm9/mm9.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.genedeserts.bed \
blib/lib/PJ/Database/mm9/mm9.genedeserts.bed \
lib/gtest_externalR/g.test.p.r \
blib/lib/gtest_externalR/g.test.p.r \
lib/PJ/Database/mm9/mm9.ensembl.refFlat.cisgenome.txt \
blib/lib/PJ/Database/mm9/mm9.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.ensembl.refFlat.cisgenome.txt \
blib/lib/PJ/Database/hg19/hg19.ensembl.refFlat.cisgenome.txt \
lib/PJ/R.pm \
blib/lib/PJ/R.pm \
lib/PJ/Database/rn4/rn4.pericentromeres.bed \
blib/lib/PJ/Database/rn4/rn4.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.subtelomeres.bed \
blib/lib/PJ/Database/mm9/mm9.subtelomeres.bed \
lib/MyShortRead/SRBed.pm \
blib/lib/MyShortRead/SRBed.pm \
lib/PJ/Database/rn4/rn4.genedeserts.bed \
blib/lib/PJ/Database/rn4/rn4.genedeserts.bed \
lib/PJ/Database/mm9/mm9.RefSeq.refFlat.cisgenome.txt \
blib/lib/PJ/Database/mm9/mm9.RefSeq.refFlat.cisgenome.txt \
lib/MyBioinfo/Common.pm \
blib/lib/MyBioinfo/Common.pm \
lib/MyBioinfo/Math.pm \
blib/lib/MyBioinfo/Math.pm \
lib/PJ/Database/hg19/hg19.RefSeq.refFlat.cisgenome.txt \
blib/lib/PJ/Database/hg19/hg19.RefSeq.refFlat.cisgenome.txt \
lib/MyShortRead/GenomeIntervalList.pm \
blib/lib/MyShortRead/GenomeIntervalList.pm \
lib/MyShortRead/Fastq.pm \
blib/lib/MyShortRead/Fastq.pm \
lib/diffReps/DiffRes.pm \
blib/lib/diffReps/DiffRes.pm \
lib/MyShortRead/MyShortRead.pm \
blib/lib/MyShortRead/MyShortRead.pm \
lib/MyShortRead/ChromBed.pm \
blib/lib/MyShortRead/ChromBed.pm \
lib/gtest_externalR/g.test.r \
blib/lib/gtest_externalR/g.test.r \
lib/diffReps/ChromaModSite.pm \
blib/lib/diffReps/ChromaModSite.pm \
lib/PJ/Database/rn4/rn4.subtelomeres.bed \
blib/lib/PJ/Database/rn4/rn4.subtelomeres.bed \
lib/PJ/Genome.pm \
blib/lib/PJ/Genome.pm \
lib/PJ/Database/hg19/hg19.genedeserts.bed \
blib/lib/PJ/Database/hg19/hg19.genedeserts.bed \
lib/MyBioinfo/NBTest.pm \
blib/lib/MyBioinfo/NBTest.pm \
lib/PJ/Database/hg19/hg19.subtelomeres.bed \
blib/lib/PJ/Database/hg19/hg19.subtelomeres.bed \
lib/MyBioinfo/GTF.pm \
blib/lib/MyBioinfo/GTF.pm \
lib/PJ/Database/rn4/rn4.ensembl.refFlat.cisgenome.txt \
blib/lib/PJ/Database/rn4/rn4.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/Root.pm \
blib/lib/PJ/Database/Root.pm
# --- MakeMaker platform_constants section:
MM_Unix_VERSION = 6.57_05
PERL_MALLOC_DEF = -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc
# --- MakeMaker tool_autosplit section:
# Usage: $(AUTOSPLITFILE) FileToSplit AutoDirToSplitInto
AUTOSPLITFILE = $(ABSPERLRUN) -e 'use AutoSplit; autosplit($$ARGV[0], $$ARGV[1], 0, 1, 1)' --
# --- MakeMaker tool_xsubpp section:
# --- MakeMaker tools_other section:
SHELL = /bin/sh
CHMOD = chmod
CP = cp
MV = mv
NOOP = $(TRUE)
NOECHO = @
RM_F = rm -f
RM_RF = rm -rf
TEST_F = test -f
TOUCH = touch
UMASK_NULL = umask 0
DEV_NULL = > /dev/null 2>&1
MKPATH = $(ABSPERLRUN) -MExtUtils::Command -e 'mkpath' --
EQUALIZE_TIMESTAMP = $(ABSPERLRUN) -MExtUtils::Command -e 'eqtime' --
FALSE = false
TRUE = true
ECHO = echo
ECHO_N = echo -n
UNINST = 0
VERBINST = 0
MOD_INSTALL = $(ABSPERLRUN) -MExtUtils::Install -e 'install([ from_to => {@ARGV}, verbose => '\''$(VERBINST)'\'', uninstall_shadows => '\''$(UNINST)'\'', dir_mode => '\''$(PERM_DIR)'\'' ]);' --
DOC_INSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'perllocal_install' --
UNINSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'uninstall' --
WARN_IF_OLD_PACKLIST = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'warn_if_old_packlist' --
MACROSTART =
MACROEND =
USEMAKEFILE = -f
FIXIN = $(ABSPERLRUN) -MExtUtils::MY -e 'MY->fixin(shift)' --
# --- MakeMaker makemakerdflt section:
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$(NOECHO) $(NOOP)
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# --- MakeMaker c_o section:
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# --- MakeMaker top_targets section:
all :: pure_all manifypods
$(NOECHO) $(NOOP)
pure_all :: config pm_to_blib subdirs linkext
$(NOECHO) $(NOOP)
subdirs :: $(MYEXTLIB)
$(NOECHO) $(NOOP)
config :: $(FIRST_MAKEFILE) blibdirs
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$(NOECHO) $(NOOP)
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linkext :: $(LINKTYPE)
$(NOECHO) $(NOOP)
# --- MakeMaker dlsyms section:
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$(NOECHO) $(NOOP)
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$(NOECHO) $(NOOP)
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# --- MakeMaker processPL section:
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$(NOECHO) $(NOOP)
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$(INST_SCRIPT)/diffReps.pl $(INST_SCRIPT)/rmdup_sorted_bed.pl \
$(INST_SCRIPT)/refgene_getnearestgene $(INST_SCRIPT)/region_analysis.pl
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$(NOECHO) $(RM_F) $(INST_SCRIPT)/findHotspots.pl
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$(INST_SCRIPT)/sam2bed.pl : bin/sam2bed.pl $(FIRST_MAKEFILE) $(INST_SCRIPT)$(DFSEP).exists $(INST_BIN)$(DFSEP).exists
$(NOECHO) $(RM_F) $(INST_SCRIPT)/sam2bed.pl
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$(NOECHO) $(RM_F) $(INST_SCRIPT)/elandsorted2bed.pl
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# --- MakeMaker subdirs section:
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# --- MakeMaker clean_subdirs section:
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$(NOECHO) $(NOOP)
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*$(LIB_EXT) core \
core.[0-9] $(INST_ARCHAUTODIR)/extralibs.all \
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$(MAKE_APERL_FILE) $(BASEEXT).def \
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# --- MakeMaker realclean_subdirs section:
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$(NOECHO) $(NOOP)
# --- MakeMaker realclean section:
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$(MAKEFILE_OLD) $(FIRST_MAKEFILE)
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# --- MakeMaker metafile section:
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$(NOECHO) $(ECHO) Generating META.yml
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$(NOECHO) $(ECHO) 'version: 1.55.4' >> META_new.yml
$(NOECHO) $(ECHO) 'abstract: Detecting differential chromatin modification sites from ChIP-seq data' >> META_new.yml
$(NOECHO) $(ECHO) 'author:' >> META_new.yml
$(NOECHO) $(ECHO) ' - Li Shen <[email protected]>' >> META_new.yml
$(NOECHO) $(ECHO) 'license: unknown' >> META_new.yml
$(NOECHO) $(ECHO) 'distribution_type: module' >> META_new.yml
$(NOECHO) $(ECHO) 'configure_requires:' >> META_new.yml
$(NOECHO) $(ECHO) ' ExtUtils::MakeMaker: 0' >> META_new.yml
$(NOECHO) $(ECHO) 'build_requires:' >> META_new.yml
$(NOECHO) $(ECHO) ' ExtUtils::MakeMaker: 0' >> META_new.yml
$(NOECHO) $(ECHO) 'requires:' >> META_new.yml
$(NOECHO) $(ECHO) ' Math::CDF: 0' >> META_new.yml
$(NOECHO) $(ECHO) ' Parallel::ForkManager: 0' >> META_new.yml
$(NOECHO) $(ECHO) ' Statistics::TTest: 0' >> META_new.yml
$(NOECHO) $(ECHO) ' Time::HiRes: 0' >> META_new.yml
$(NOECHO) $(ECHO) 'no_index:' >> META_new.yml
$(NOECHO) $(ECHO) ' directory:' >> META_new.yml
$(NOECHO) $(ECHO) ' - t' >> META_new.yml
$(NOECHO) $(ECHO) ' - inc' >> META_new.yml
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$(NOECHO) $(ECHO) 'meta-spec:' >> META_new.yml
$(NOECHO) $(ECHO) ' url: http://module-build.sourceforge.net/META-spec-v1.4.html' >> META_new.yml
$(NOECHO) $(ECHO) ' version: 1.4' >> META_new.yml
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# --- MakeMaker signature section:
signature :
cpansign -s
# --- MakeMaker dist_basics section:
distclean :: realclean distcheck
$(NOECHO) $(NOOP)
distcheck :
$(PERLRUN) "-MExtUtils::Manifest=fullcheck" -e fullcheck
skipcheck :
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manifest :
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veryclean : realclean
$(RM_F) *~ */*~ *.orig */*.orig *.bak */*.bak *.old */*.old
# --- MakeMaker dist_core section:
dist : $(DIST_DEFAULT) $(FIRST_MAKEFILE)
$(NOECHO) $(ABSPERLRUN) -l -e 'print '\''Warning: Makefile possibly out of date with $(VERSION_FROM)'\''' \
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zipdist : $(DISTVNAME).zip
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$(RM_RF) $(DISTVNAME)
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shdist : distdir
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$(SHAR) $(DISTVNAME) > $(DISTVNAME).shar
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# --- MakeMaker distdir section:
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$(RM_RF) $(DISTVNAME)
$(PERLRUN) "-MExtUtils::Manifest=manicopy,maniread" \
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$(NOECHO) $(NOOP)
# --- MakeMaker dist_test section:
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cd $(DISTVNAME) && $(ABSPERLRUN) Makefile.PL
cd $(DISTVNAME) && $(MAKE) $(PASTHRU)
cd $(DISTVNAME) && $(MAKE) test $(PASTHRU)
# --- MakeMaker dist_ci section:
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$(PERLRUN) "-MExtUtils::Manifest=maniread" \
-e "@all = keys %{ maniread() };" \
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# --- MakeMaker distsignature section:
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$(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{SIGNATURE} => q{Public-key signature (added by MakeMaker)}}) } ' \
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# --- MakeMaker install section:
install :: pure_install doc_install
$(NOECHO) $(NOOP)
install_perl :: pure_perl_install doc_perl_install
$(NOECHO) $(NOOP)
install_site :: pure_site_install doc_site_install
$(NOECHO) $(NOOP)
install_vendor :: pure_vendor_install doc_vendor_install
$(NOECHO) $(NOOP)
pure_install :: pure_$(INSTALLDIRS)_install
$(NOECHO) $(NOOP)
doc_install :: doc_$(INSTALLDIRS)_install
$(NOECHO) $(NOOP)
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$(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
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$(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
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$(NOECHO) umask 022; $(MOD_INSTALL) \
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$(NOECHO) $(WARN_IF_OLD_PACKLIST) \
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$(NOECHO) umask 02; $(MOD_INSTALL) \
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$(NOECHO) umask 022; $(MOD_INSTALL) \
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>> $(DESTINSTALLSITEARCH)/perllocal.pod
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uninstall :: uninstall_from_$(INSTALLDIRS)dirs
$(NOECHO) $(NOOP)
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uninstall_from_sitedirs ::
$(NOECHO) $(UNINSTALL) $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist
uninstall_from_vendordirs ::
# --- MakeMaker force section:
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FORCE :
$(NOECHO) $(NOOP)
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$(NOECHO) $(ECHO) "==> Your Makefile has been rebuilt. <=="
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# --- MakeMaker staticmake section:
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$(MAP_TARGET) :: static $(MAKE_APERL_FILE)
$(MAKE) $(USEMAKEFILE) $(MAKE_APERL_FILE) $@
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# --- MakeMaker ppd section:
# Creates a PPD (Perl Package Description) for a binary distribution.
ppd :
$(NOECHO) $(ECHO) '<SOFTPKG NAME="$(DISTNAME)" VERSION="1.55.4">' > $(DISTNAME).ppd
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$(NOECHO) $(ECHO) ' <AUTHOR>Li Shen <[email protected]></AUTHOR>' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <IMPLEMENTATION>' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <REQUIRE NAME="Math::CDF" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <REQUIRE NAME="Parallel::ForkManager" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <REQUIRE NAME="Statistics::TTest" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <REQUIRE NAME="Time::HiRes" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <ARCHITECTURE NAME="x86_64-linux-gnu-thread-multi-5.14" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' <CODEBASE HREF="" />' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) ' </IMPLEMENTATION>' >> $(DISTNAME).ppd
$(NOECHO) $(ECHO) '</SOFTPKG>' >> $(DISTNAME).ppd
# --- MakeMaker pm_to_blib section:
pm_to_blib : $(FIRST_MAKEFILE) $(TO_INST_PM)
$(NOECHO) $(ABSPERLRUN) -MExtUtils::Install -e 'pm_to_blib({@ARGV}, '\''$(INST_LIB)/auto'\'', q[$(PM_FILTER)], '\''$(PERM_DIR)'\'')' -- \
lib/PJ/Database/rn4/rn4.RefSeq.refFlat.cisgenome.txt blib/lib/PJ/Database/rn4/rn4.RefSeq.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.pericentromeres.bed blib/lib/PJ/Database/hg19/hg19.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.pericentromeres.bed blib/lib/PJ/Database/mm9/mm9.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.genedeserts.bed blib/lib/PJ/Database/mm9/mm9.genedeserts.bed \
lib/gtest_externalR/g.test.p.r blib/lib/gtest_externalR/g.test.p.r \
lib/PJ/Database/mm9/mm9.ensembl.refFlat.cisgenome.txt blib/lib/PJ/Database/mm9/mm9.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/hg19/hg19.ensembl.refFlat.cisgenome.txt blib/lib/PJ/Database/hg19/hg19.ensembl.refFlat.cisgenome.txt \
lib/PJ/R.pm blib/lib/PJ/R.pm \
lib/PJ/Database/rn4/rn4.pericentromeres.bed blib/lib/PJ/Database/rn4/rn4.pericentromeres.bed \
lib/PJ/Database/mm9/mm9.subtelomeres.bed blib/lib/PJ/Database/mm9/mm9.subtelomeres.bed \
lib/MyShortRead/SRBed.pm blib/lib/MyShortRead/SRBed.pm \
lib/PJ/Database/rn4/rn4.genedeserts.bed blib/lib/PJ/Database/rn4/rn4.genedeserts.bed \
lib/PJ/Database/mm9/mm9.RefSeq.refFlat.cisgenome.txt blib/lib/PJ/Database/mm9/mm9.RefSeq.refFlat.cisgenome.txt \
lib/MyBioinfo/Common.pm blib/lib/MyBioinfo/Common.pm \
lib/MyBioinfo/Math.pm blib/lib/MyBioinfo/Math.pm \
lib/PJ/Database/hg19/hg19.RefSeq.refFlat.cisgenome.txt blib/lib/PJ/Database/hg19/hg19.RefSeq.refFlat.cisgenome.txt \
lib/MyShortRead/GenomeIntervalList.pm blib/lib/MyShortRead/GenomeIntervalList.pm \
lib/MyShortRead/Fastq.pm blib/lib/MyShortRead/Fastq.pm \
lib/diffReps/DiffRes.pm blib/lib/diffReps/DiffRes.pm \
lib/MyShortRead/MyShortRead.pm blib/lib/MyShortRead/MyShortRead.pm \
lib/MyShortRead/ChromBed.pm blib/lib/MyShortRead/ChromBed.pm \
lib/gtest_externalR/g.test.r blib/lib/gtest_externalR/g.test.r \
lib/diffReps/ChromaModSite.pm blib/lib/diffReps/ChromaModSite.pm \
lib/PJ/Database/rn4/rn4.subtelomeres.bed blib/lib/PJ/Database/rn4/rn4.subtelomeres.bed \
lib/PJ/Genome.pm blib/lib/PJ/Genome.pm \
lib/PJ/Database/hg19/hg19.genedeserts.bed blib/lib/PJ/Database/hg19/hg19.genedeserts.bed \
lib/MyBioinfo/NBTest.pm blib/lib/MyBioinfo/NBTest.pm \
lib/PJ/Database/hg19/hg19.subtelomeres.bed blib/lib/PJ/Database/hg19/hg19.subtelomeres.bed \
lib/MyBioinfo/GTF.pm blib/lib/MyBioinfo/GTF.pm \
lib/PJ/Database/rn4/rn4.ensembl.refFlat.cisgenome.txt blib/lib/PJ/Database/rn4/rn4.ensembl.refFlat.cisgenome.txt \
lib/PJ/Database/Root.pm blib/lib/PJ/Database/Root.pm
$(NOECHO) $(TOUCH) pm_to_blib
# --- MakeMaker selfdocument section: