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Hi, I have installed the maize genomes, but Ig ot the following error code while while the script:
ngs.plot.r -G B73 -R genebody -C ../9_rep1_rmp.bam -O Kla_gene -T Arabi_4ac -L 300 -FL 300 Configuring variables... Using database: /public/home/qtxu/software/ngsplot/NGSPLOT/ngsplot/database/B73/B73.ensembl.genebody.protein_coding.RData Done Loading R libraries.....Done Analyze bam files and calculate coverageWarning message: 'isNotPrimaryRead' is deprecated. Use 'isSecondaryAlignment' instead. See help("Deprecated") .Done Plotting figures...Error in plotheat(reg.list, uniq.reg, enrichList, v.low.cutoff, go.algo, : object 'g.order' not found Execution halted
I have checked the genomes, it showed that the genome was sucessfully installed.
ngsplotdb.py list ID Assembly Species EnsVer NPVer InstalledFeatures AGPv3 AGPv3 zea_mays 21.0 3.0 exon,genebody,tss,tes B73 Zm-B73-REFERENCE-NAM-5.0 zea_mays 53.0 3.0 exon,genebody,tss,tes hg19 GRCh37 homo_sapiens 75.0 3.0 cgi,exon,genebody,tss,tes MSUv7 MSUv7 oryza_sativa 0.0 3.0 exon,genebody,tss,tes Rapdb IRGSP-1.0 oryza_sativa 52.0 3.0 exon,genebody,tss,tes Tair10 TAIR10 arabidopsis_thaliana 21.0 3.0 exon,genebody,tss,tes
What had went wrong? Could any one help me out? Thanks!!!
The text was updated successfully, but these errors were encountered:
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Hi, I have installed the maize genomes, but Ig ot the following error code while while the script:
I have checked the genomes, it showed that the genome was sucessfully installed.
What had went wrong? Could any one help me out? Thanks!!!
The text was updated successfully, but these errors were encountered: