OverflowError with test file

[MarcusMGSS]

Hello,

I tried running region_analysis with my Chip-seq data, as well as with your examples, but I keep getting the following:
OverflowError: can't convert negative values to CHRPOS.
I have checked my files, there are no negative coordinates present. I've properly installed the genomes, pybedtools and bedtools as indicated.
Has anyone else encountered this error?

Cheers,
Marcus

[sunmaybury]

I am running into the same problem for all my sample except one. Did you ever resolve this issue?

Thanks,
Sun

[MarcusMGSS]

Hi Sun,

I don't think I ever actually resolved this issue.
The region_analysis.pl from the DiffReps package (https://github.com/shenlab-sinai/diffreps) however worked very well for me. It's a slightly different version ( I think), but the problem doesn't appear.

Hope that helps,
Marcus