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SQANTI3.conda_env.yml
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SQANTI3.conda_env.yml
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name: SQANTI3.env
channels:
- r
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _anaconda_depends=2020.02=py37_0
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- alabaster=0.7.12=py37_0
- anaconda=custom=py37_1
- anaconda-client=1.7.2=py37_0
- anaconda-project=0.8.4=py_0
- argcomplete=1.11.1=py_0
- argh=0.26.2=py37_0
- arrow=0.13.1=py37_0
- asn1crypto=1.3.0=py37_0
- astroid=2.4.0=py37_0
- astropy=4.0.1.post1=py37h7b6447c_0
- atomicwrites=1.4.0=py_0
- attrs=19.3.0=py_0
- autopep8=1.4.4=py_0
- babel=2.8.0=py_0
- backcall=0.1.0=py37_0
- backports=1.0=py_2
- backports.shutil_get_terminal_size=1.0.0=py37_2
- bcbio-nextgen=1.2.3=py_0
- bcbiogff=0.6.6=py_1
- beautifulsoup4=4.9.0=py37_0
- bedtools=2.29.2=hc088bd4_0
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- bioblend=0.13.0=py_0
- biopython=1.76=py37h7b6447c_0
- bitarray=1.2.1=py37h7b6447c_0
- bkcharts=0.2=py37_0
- blas=1.0=mkl
- bleach=3.1.4=py_0
- blosc=1.16.3=hd408876_0
- bokeh=2.0.2=py37_0
- boto=2.49.0=py37_0
- bottleneck=1.3.2=py37heb32a55_0
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2020.1.1=0
- cairo=1.14.12=h8948797_3
- certifi=2020.4.5.1=py37_0
- cffi=1.14.0=py37h2e261b9_0
- chardet=3.0.4=py37_1003
- click=7.1.2=py_0
- cloudpickle=1.4.1=py_0
- clyent=1.2.2=py37_1
- colorama=0.4.3=py_0
- coloredlogs=10.0=py37_0
- contextlib2=0.6.0.post1=py_0
- coverage=5.0=py37h7b6447c_0
- cryptography=2.9.2=py37h1ba5d50_0
- curl=7.67.0=hbc83047_0
- cycler=0.10.0=py37_0
- cython=0.29.17=py37he6710b0_0
- cytoolz=0.10.1=py37h7b6447c_0
- cyvcf2=0.11.7=py37hce88a48_0
- dask=2.16.0=py_0
- dask-core=2.16.0=py_0
- dbus=1.13.14=hb2f20db_0
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- diff-match-patch=20181111=py_0
- distributed=2.16.0=py37_0
- dnapi=1.1=py_3
- docutils=0.16=py37_0
- entrypoints=0.3=py37_0
- et_xmlfile=1.0.1=py37_0
- expat=2.2.6=he6710b0_0
- fadapa=0.3.1=py_1
- fastcache=1.1.0=py37h7b6447c_0
- filelock=3.0.12=py_0
- flake8=3.7.9=py37_0
- flask=1.1.2=py_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.9.1=h8a8886c_1
- fribidi=1.0.5=h7b6447c_0
- fsspec=0.7.1=py_0
- future=0.18.2=py37_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- geneimpacts=0.3.7=py_1
- get_terminal_size=1.0.0=haa9412d_0
- gevent=1.4.0=py37h7b6447c_0
- gffread=0.11.7=h8b12597_0
- gffutils=0.10.1=py_0
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.63.1=h5a9c865_0
- glob2=0.7=py_0
- gmp=6.1.2=h6c8ec71_1
- gmpy2=2.0.8=py37h10f8cd9_2
- graphite2=1.3.13=h23475e2_0
- greenlet=0.4.15=py37h7b6447c_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- h5py=2.10.0=py37h7918eee_0
- harfbuzz=1.8.8=hffaf4a1_0
- hdf5=1.10.4=hb1b8bf9_0
- heapdict=1.0.1=py_0
- html5lib=1.0.1=py37_0
- htslib=1.9=ha228f0b_7
- humanfriendly=8.2=py37_0
- hypothesis=5.11.0=py_0
- icu=58.2=he6710b0_3
- idna=2.9=py_1
- imageio=2.8.0=py_0
- imagesize=1.2.0=py_0
- importlib_metadata=1.5.0=py37_0
- intel-openmp=2020.1=217
- intervaltree=3.0.2=py_0
- ipykernel=5.1.4=py37h39e3cac_0
- ipyparallel=6.2.4=py37_0
- ipython=7.13.0=py37h5ca1d4c_0
- ipython-cluster-helper=0.6.4=py_0
- ipython_genutils=0.2.0=py37_0
- ipywidgets=7.5.1=py_0
- isort=4.3.21=py37_0
- itsdangerous=1.1.0=py37_0
- jbig=2.1=hdba287a_0
- jdcal=1.4.1=py_0
- jedi=0.15.2=py37_0
- jeepney=0.4.3=py_0
- jinja2=2.11.2=py_0
- joblib=0.14.1=py_0
- jpeg=9b=h024ee3a_2
- json5=0.9.4=py_0
- jsonschema=3.2.0=py37_0
- jupyter=1.0.0=py37_7
- jupyter_client=6.1.3=py_0
- jupyter_console=6.1.0=py_0
- jupyter_core=4.6.3=py37_0
- jupyterlab=1.2.6=pyhf63ae98_0
- jupyterlab_server=1.1.1=py_0
- keyring=21.1.1=py37_2
- kiwisolver=1.2.0=py37hfd86e86_0
- krb5=1.16.4=h173b8e3_0
- lazy-object-proxy=1.4.3=py37h7b6447c_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libarchive=3.3.3=h5d8350f_5
- libcurl=7.67.0=h20c2e04_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- liblief=0.10.1=he6710b0_0
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.16=h1bed415_0
- libspatialindex=1.9.3=he6710b0_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_0
- libtool=2.4.6=h7b6447c_5
- libuuid=1.0.3=h1bed415_2
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- libxslt=1.1.33=h7d1a2b0_0
- llvmlite=0.32.0=py37hd408876_0
- locket=0.2.0=py37_1
- logbook=1.5.3=py37h516909a_0
- lxml=4.5.0=py37hefd8a0e_0
- lz4-c=1.8.1.2=h14c3975_0
- lzo=2.10=h7b6447c_2
- make=4.2.1=h1bed415_1
- markupsafe=1.1.1=py37h7b6447c_0
- matplotlib=3.1.3=py37_0
- matplotlib-base=3.1.3=py37hef1b27d_0
- mccabe=0.6.1=py37_1
- minimap2=2.17=h8b12597_1
- mirtop=0.4.23=py_0
- mistune=0.8.4=py37h7b6447c_0
- mkl=2020.1=217
- mkl-service=2.3.0=py37he904b0f_0
- mkl_fft=1.0.15=py37ha843d7b_0
- mkl_random=1.1.0=py37hd6b4f25_0
- mock=4.0.2=py_0
- more-itertools=8.2.0=py_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.1=hdf1c602_3
- mpmath=1.1.0=py37_0
- msgpack-python=1.0.0=py37hfd86e86_1
- multipledispatch=0.6.0=py37_0
- nbconvert=5.6.1=py37_0
- nbformat=5.0.6=py_0
- ncurses=6.2=he6710b0_1
- netifaces=0.10.9=py37h8f50634_1002
- networkx=2.4=py_0
- nltk=3.4.5=py37_0
- nose=1.3.7=py37_2
- notebook=6.0.3=py37_0
- numba=0.49.0=py37h0573a6f_0
- numexpr=2.7.1=py37h423224d_0
- numpy=1.18.1=py37h4f9e942_0
- numpy-base=1.18.1=py37hde5b4d6_1
- numpydoc=0.9.2=py_0
- olefile=0.46=py37_0
- openpyxl=3.0.3=py_0
- openssl=1.1.1g=h7b6447c_0
- packaging=20.3=py_0
- pandas=1.0.3=py37h0573a6f_0
- pandoc=2.2.3.2=0
- pandocfilters=1.4.2=py37_1
- pango=1.42.4=h049681c_0
- parso=0.5.2=py_0
- partd=1.1.0=py_0
- patchelf=0.10=he6710b0_0
- path=13.1.0=py37_0
- path.py=12.4.0=0
- pathlib2=2.3.5=py37_0
- pathspec=0.7.0=py_0
- pathtools=0.1.2=py_1
- patsy=0.5.1=py37_0
- pcre=8.43=he6710b0_0
- pep8=1.7.1=py37_0
- perl=5.26.2=h14c3975_0
- pexpect=4.8.0=py37_0
- pickleshare=0.7.5=py37_0
- pillow=7.1.2=py37hb39fc2d_0
- pip=20.0.2=py37_3
- pixman=0.38.0=h7b6447c_0
- pkginfo=1.5.0.1=py37_0
- pluggy=0.13.1=py37_0
- ply=3.11=py37_0
- progressbar2=3.37.1=py37_0
- prometheus_client=0.7.1=py_0
- prompt-toolkit=3.0.4=py_0
- prompt_toolkit=3.0.4=0
- psutil=5.7.0=py37h7b6447c_0
- ptyprocess=0.6.0=py37_0
- py=1.8.1=py_0
- py-lief=0.10.1=py37h403a769_0
- pybedtools=0.8.1=py37h4ef193e_1
- pycodestyle=2.5.0=py37_0
- pycosat=0.6.3=py37h7b6447c_0
- pycparser=2.20=py_0
- pycrypto=2.6.1=py37h14c3975_9
- pycurl=7.43.0.5=py37h1ba5d50_0
- pydocstyle=4.0.1=py_0
- pyfaidx=0.5.8=py_1
- pyflakes=2.1.1=py37_0
- pygments=2.6.1=py_0
- pylint=2.5.0=py37_1
- pyodbc=4.0.30=py37he6710b0_0
- pyopenssl=19.1.0=py37_0
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py37h05f1152_2
- pyrsistent=0.16.0=py37h7b6447c_0
- pysam=0.15.3=py37hda2845c_1
- pysocks=1.7.1=py37_0
- pytables=3.6.1=py37h71ec239_0
- pytest=5.4.1=py37_0
- pytest-arraydiff=0.3=py37h39e3cac_0
- pytest-astropy=0.8.0=py_0
- pytest-astropy-header=0.1.2=py_0
- pytest-cov=2.8.1=py_0
- pytest-doctestplus=0.5.0=py_0
- pytest-mock=3.1.0=py_0
- pytest-openfiles=0.5.0=py_0
- pytest-remotedata=0.3.2=py37_0
- pytest-runner=5.2=py_0
- python=3.7.6=h0371630_2
- python-dateutil=2.8.1=py_0
- python-jsonrpc-server=0.3.4=py_0
- python-language-server=0.31.10=py37_0
- python-libarchive-c=2.9=py_0
- python-utils=2.3.0=py37_0
- python_abi=3.7=1_cp37m
- pytz=2020.1=py_0
- pyvcf=0.6.8=py37hc8dfbb8_1001
- pywavelets=1.1.1=py37h7b6447c_0
- pyxdg=0.26=py_0
- pyyaml=5.3.1=py37h7b6447c_0
- pyzmq=18.1.1=py37he6710b0_0
- qdarkstyle=2.8.1=py_0
- qt=5.9.7=h5867ecd_1
- qtawesome=0.7.0=py_0
- qtconsole=4.7.3=py_0
- qtpy=1.9.0=py_0
- r=3.6.0=r36_0
- r-assertthat=0.2.1=r36h6115d3f_0
- r-base=3.6.1=h9bb98a2_1
- r-bh=1.69.0_1=r36h6115d3f_0
- r-biocmanager=1.30.10=r36h6115d3f_1
- r-boot=1.3_20=r36h6115d3f_0
- r-class=7.3_15=r36h96ca727_0
- r-cli=1.1.0=r36h6115d3f_0
- r-cluster=2.0.8=r36ha65eedd_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-colorspace=1.4_1=r36h96ca727_0
- r-crayon=1.3.4=r36h6115d3f_0
- r-dichromat=2.0_0=r36h6115d3f_4
- r-digest=0.6.18=r36h96ca727_0
- r-dplyr=0.8.0.1=r36h29659fb_0
- r-fansi=0.4.0=r36h96ca727_0
- r-foreign=0.8_71=r36h96ca727_0
- r-ggplot2=3.1.1=r36h6115d3f_0
- r-glue=1.3.1=r36h96ca727_0
- r-gridextra=2.3=r36h6115d3f_0
- r-gtable=0.3.0=r36h6115d3f_0
- r-kernsmooth=2.23_15=r36ha65eedd_4
- r-labeling=0.3=r36h6115d3f_4
- r-lattice=0.20_38=r36h96ca727_0
- r-lazyeval=0.2.2=r36h96ca727_0
- r-magrittr=1.5=r36h6115d3f_4
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-mgcv=1.8_28=r36h96ca727_0
- r-munsell=0.5.0=r36h6115d3f_0
- r-nlme=3.1_139=r36ha65eedd_0
- r-nnet=7.3_12=r36h96ca727_0
- r-pillar=1.3.1=r36h6115d3f_0
- r-pkgconfig=2.0.2=r36h6115d3f_0
- r-plogr=0.2.0=r36h6115d3f_0
- r-plyr=1.8.4=r36h29659fb_0
- r-purrr=0.3.2=r36h96ca727_0
- r-r6=2.4.0=r36h6115d3f_0
- r-rcolorbrewer=1.1_2=r36h6115d3f_0
- r-rcpp=1.0.1=r36h29659fb_0
- r-recommended=3.6.0=r36_0
- r-reshape=0.8.8=r36h6115d3f_0
- r-reshape2=1.4.3=r36h29659fb_0
- r-rlang=0.3.4=r36h96ca727_0
- r-rpart=4.1_15=r36h96ca727_0
- r-scales=1.0.0=r36h29659fb_0
- r-spatial=7.3_11=r36h96ca727_4
- r-stringi=1.4.3=r36h29659fb_0
- r-stringr=1.4.0=r36h6115d3f_0
- r-survival=2.44_1.1=r36h96ca727_0
- r-tibble=2.1.1=r36h96ca727_0
- r-tidyselect=0.2.5=r36h29659fb_0
- r-utf8=1.1.4=r36h96ca727_0
- r-viridislite=0.3.0=r36h6115d3f_0
- r-withr=2.1.2=r36h6115d3f_0
- readline=7.0=h7b6447c_5
- requests=2.23.0=py37_0
- requests-toolbelt=0.9.1=py_0
- ripgrep=11.0.2=he32d670_0
- rope=0.16.0=py_0
- rtree=0.9.4=py37_1
- ruamel_yaml=0.15.87=py37h7b6447c_0
- scikit-image=0.16.2=py37h0573a6f_0
- scikit-learn=0.22.1=py37hd81dba3_0
- scipy=1.4.1=py37h0b6359f_0
- seaborn=0.10.1=py_0
- secretstorage=3.1.2=py37_0
- send2trash=1.5.0=py37_0
- seqcluster=1.2.7=py_0
- setuptools=46.2.0=py37_0
- simplegeneric=0.8.1=py37_2
- simplejson=3.17.0=py37h7b6447c_0
- singledispatch=3.4.0.3=py37_0
- sip=4.19.8=py37hf484d3e_0
- six=1.14.0=py37_0
- snappy=1.1.7=hbae5bb6_3
- snowballstemmer=2.0.0=py_0
- sortedcollections=1.1.2=py37_0
- sortedcontainers=2.1.0=py37_0
- soupsieve=2.0=py_0
- sphinx=3.0.3=py_0
- sphinxcontrib=1.0=py37_1
- sphinxcontrib-applehelp=1.0.2=py_0
- sphinxcontrib-devhelp=1.0.2=py_0
- sphinxcontrib-htmlhelp=1.0.3=py_0
- sphinxcontrib-jsmath=1.0.1=py_0
- sphinxcontrib-qthelp=1.0.3=py_0
- sphinxcontrib-serializinghtml=1.1.4=py_0
- sphinxcontrib-websupport=1.2.1=py_0
- spyder=4.1.3=py37_0
- spyder-kernels=1.9.1=py37_0
- sqlalchemy=1.3.16=py37h7b6447c_0
- sqlite=3.31.1=h62c20be_1
- statsmodels=0.11.0=py37h7b6447c_0
- sympy=1.5.1=py37_0
- tabulate=0.8.3=py37_0
- tbb=2020.0=hfd86e86_0
- tblib=1.6.0=py_0
- terminado=0.8.3=py37_0
- testpath=0.4.4=py_0
- tk=8.6.8=hbc83047_0
- tktable=2.10=h14c3975_0
- toml=0.10.0=py37h28b3542_0
- toolz=0.10.0=py_0
- tornado=6.0.4=py37h7b6447c_1
- tqdm=4.46.0=py_0
- traitlets=4.3.3=py37_0
- typed-ast=1.4.1=py37h7b6447c_0
- typing_extensions=3.7.4.1=py37_0
- ujson=1.35=py37h14c3975_0
- unicodecsv=0.14.1=py37_0
- unixodbc=2.3.7=h14c3975_0
- urllib3=1.25.8=py37_0
- viennarna=2.4.14=py37h5202443_1
- watchdog=0.10.2=py37_0
- wcwidth=0.1.9=py_0
- webencodings=0.5.1=py37_1
- werkzeug=1.0.1=py_0
- wheel=0.34.2=py37_0
- widgetsnbextension=3.5.1=py37_0
- wrapt=1.11.2=py37h7b6447c_0
- wurlitzer=2.0.0=py37_0
- xlrd=1.2.0=py37_0
- xlsxwriter=1.2.8=py_0
- xlwt=1.3.0=py37_0
- xz=5.2.5=h7b6447c_0
- yaml=0.1.7=had09818_2
- yamllint=1.21.0=pyh9f0ad1d_0
- yapf=0.28.0=py_0
- zeromq=4.3.1=he6710b0_3
- zict=2.0.0=py_0
- zipp=3.1.0=py_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
- pip:
- bx-python==0.8.8
- sklearn==0.0