From 35076ae7fb2b4bc879dace35af5d33d2bffab131 Mon Sep 17 00:00:00 2001 From: "Mathieu Boudreau, PhD" Date: Wed, 14 Feb 2024 11:22:59 -0400 Subject: [PATCH] Reorder README --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 2ddd69d..e8f8526 100644 --- a/README.md +++ b/README.md @@ -12,6 +12,14 @@ Click on the badge "Open in Colab" ☝️. The notebook takes about 2 hours to r ## Run in a Docker container (NeuroLibre, MyBinder, repo2ocker) +### repo2docker + +To run locally on your computer, you must first have Docker installed, running, and have created an account. Follow the instructions [here](https://www.docker.com/get-started/). + +Then, you need to install [repo2docker](https://github.com/jupyterhub/repo2docker). Install via pip: `pip install jupyter-repo2docker` + +To launch a Docker session from this repo, run `repo2docker --ref main https://www.github.com/shimming-toolbox/rf-shimming-7t`. After it's completed, it will provie you with a weblink, copy and open this link in a browser to open the Jupyter Notebook session. + ### NeuroLibre > [!NOTE] @@ -27,14 +35,6 @@ Click on the badge "launch binder" ☝️. This environment setup downloads the If you'd like to re-run the processing from scratch, change the `notebook = 'neurolibre-figures'` line in the first cell to `notebook = 'neurolibre-clean'`. This will delete the processed files and then re-run the entire processing pipeline. Note that some cells take a lot of RAM, and may fail on certain systems. -### repo2docker - -To run locally on your computer, you must first have Docker installed, running, and have created an account. Follow the instructions [here](https://www.docker.com/get-started/). - -Then, you need to install [repo2docker](https://github.com/jupyterhub/repo2docker). Install via pip: `pip install jupyter-repo2docker` - -To launch a Docker session from this repo, run `repo2docker --ref main https://www.github.com/shimming-toolbox/rf-shimming-7t`. After it's completed, it will provie you with a weblink, copy and open this link in a browser to open the Jupyter Notebook session. - ## Run locally with Jupyter Notebook Install [Spinal Cord Toolbox](https://spinalcordtoolbox.com/user_section/installation.html)