main-template.tex

\documentclass{mimosis}
\usepackage[a4paper]{geometry}
\geometry{left=1.55in}
\geometry{right=1.55in}
% PDF-A output
%\usepackage{metalogo}
%\usepackage[a-3u]{pdfx}

% Compile just one chapter
%\includeonly{Sources/chapter_to_include.tex}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Some of my favorite personal adjustments
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% These are the adjustments that I consider necessary for typesetting
% a nice thesis. However, they are *not* included in the template,   as
% I do not want to force you to use them.

% This ensures that I am able to typeset bold font in table while still aligning the numbers
% correctly.
\usepackage{etoolbox}

\usepackage{siunitx}
\DeclareSIUnit\px{px}
\DeclareSIUnit\dBm{dBm}

\sisetup{%
  detect-all           = true,
  detect-family        = true,
  detect-mode          = true,
  detect-shape         = true,
  detect-weight        = true
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Customs 
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


% Openright with oneside class
% Taken from http://mirrors.ctan.org/macros/latex/unpacked/latex.ltx
\makeatletter
\def\cleardoublepage{\clearpage\ifodd\c@page\else
    \hbox{}\newpage\if@twocolumn\hbox{}\newpage\fi\fi}
\makeatother

% No footnote ends in different pages
\interfootnotelinepenalty=10000

\usepackage{amsthm}
% Argmax
\DeclareMathOperator*{\argmax}{arg\,max}

% Lemma environment
%\newtheorem{thm}{Theorem}[section]
\newtheorem{lem}{Lemma}
% Better QED
\renewcommand\qedsymbol{$\blacksquare$}

% Algorithms
\usepackage{algpseudocode,algorithm,algorithmicx}
% Asymptotic computational complexity
\newcommand\bigO[1]{$\mathcal{O}(#1)$}

\definecolor{UNIPDRED}{RGB}{155,0,20}

\setcounter{tocdepth}{3}
\setcounter{secnumdepth}{3}

% Coloured chapter numbers
%\renewcommand*{\chapterformat}{%
% \fontsize{60}{68}\selectfont\textcolor{uniPdRed}{\thechapter}\hspace{0.2in}%
%}

%\renewcommand\chapterlinesformat[3]{\Ifstr{#2}{}{}{#2\\*}#3}

\usepackage[inline]{enumitem}

% Fancy headings
\KOMAoption{chapterprefix}{true}
\renewcommand*\raggedchapter{\centering}
\RedeclareSectionCommand[beforeskip=0pt,afterskip=4\baselineskip]{chapter}
\setkomafont{chapterprefix}{\normalsize\mdseries}

\renewcommand*{\chapterformat}{%
  \chapappifchapterprefix{\nobreakspace}\textcolor{UNIPDRED}{\LARGE{\hspace{0.01cm} \thechapter}}\autodot%
  \IfUsePrefixLine{%
    \par\nobreak\vspace{-\parskip}\vspace{-.6\baselineskip}%
    {\rule{0.9\textwidth}{0.5pt}}%
  }{\enskip}%
}

% Better tables
\usepackage{colortbl}
\usepackage{multirow}
\usepackage{hhline}

\renewcommand\chapterlineswithprefixformat[3]{%
  \MakeUppercase{#2#3}
}

% Dropped letters
\usepackage{lettrine}

% Placeholder text
\usepackage{lipsum}

% TikZ & Co.
\usepackage{tikz}
\usepackage{pgfplots}
\pgfplotsset{compat=1.16}
\usepgfplotslibrary{polar}
\usepackage{pgfplotstable}
\pgfplotsset{plot coordinates/math parser=false} 
\usetikzlibrary {patterns.meta}
\usetikzlibrary{plotmarks,patterns,patterns.meta,decorations.pathreplacing,backgrounds,calc,arrows,arrows.meta,spy,matrix}
\newlength\fheight
\newlength\fwidth
\usepackage{booktabs}
\usepackage{multirow}
\usetikzlibrary{patterns,decorations.pathreplacing,backgrounds,calc}
\usepgfplotslibrary{patchplots,groupplots,fillbetween}

\usepackage{afterpage}
\usepackage{tabulary}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Hyperlinks & bookmarks
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\usepackage{bookmark}
\bookmarksetup{color=black}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% I like the bibliography to be extremely plain, showing only a numeric
% identifier and citing everything in simple brackets. The first names,
% if present, will be initialized. DOIs and URLs will be preserved.

\usepackage[%
  autocite     = plain,
  backend      = biber,
  doi          = true,
  url          = true,
  giveninits   = true,
  hyperref     = true,
  maxbibnames  = 99,
  maxcitenames = 99,
  sorting		= none,
  style        = numeric-comp,
  ]{biblatex}
\hypersetup{
  % Document-wide hyperlinks color
  colorlinks=true,
  citecolor=UNIPDRED,
  %allbordercolors=UNIPDRED
}
  
 \usepackage{xurl}

\addbibresource{Sources/bibl.bib}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Fonts
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%\usepackage[lf]{ebgaramond}
%\usepackage[scale=0.8]{sourcecodepro}
\usepackage{newpxtext,newpxmath} % Palatino like text and math
\onehalfspacing

\renewcommand{\th}{\textsuperscript{\textup{th}}\xspace}

\input{Sources/acronyms.tex}

\makeindex
\makeglossaries

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Incipit
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\title{\textcolor{UNIPDRED}{Dissertation title}}
\author{Dissertation author}

\begin{document}

\frontmatter
  \include{Sources/Title_Unipd}
  \include{Sources/Title_UniPD_background_logo}
  \include{Sources/Title_UniPD_background_logo_2}
  \include{Sources/Title_UniPD_tufte_like}
  %\include{Sources/Abstract}
  \newpage\phantom{justskipthepage}

{
  % Custom link color for TOC
  \hypersetup{linkcolor=black}
  \tableofcontents
}

\mainmatter
  \include{Sources/Introduction}
  
% This ensures that the subsequent sections are being included as root
% items in the bookmark structure of your PDF reader.
\bookmarksetup{startatroot}
\backmatter

  \begingroup
    \let\clearpage\relax
    \printglossary[type=\acronymtype]
    \newpage
    \printglossary
  \endgroup

  \printindex
  \printbibliography

\end{document}