diff --git a/.bumpversion.cfg b/.bumpversion.cfg index bd89ef6..89aa570 100755 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.2.1 +current_version = 1.2.2 commit = True tag = False diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 0692be2..45a0339 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - VERSION: '1.2.1' #versioned by bump2version + VERSION: '1.2.2' #versioned by bump2version name: pkgdown diff --git a/DESCRIPTION b/DESCRIPTION index d216ae6..3c46fbe 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: oncoEnrichR Type: Package Title: Cancer-dedicated gene set interpretation -Version: 1.2.1 +Version: 1.2.2 Date: 2022-09-02 Authors@R: person(given = "Sigve", family = "Nakken", role = c("aut", "cre"), email = "sigven@ifi.uio.no", diff --git a/README.md b/README.md index bd68120..33a0acd 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ **oncoEnrichR** is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes. -Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.1) +Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.2) **oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report. diff --git a/pkgdown/index.md b/pkgdown/index.md index 73b4d36..cd7abcc 100644 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -21,7 +21,7 @@ data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below). Web-based access to **oncoEnrichR** is available at -[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.1) +[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.2.2)
diff --git a/vignettes/installation.Rmd b/vignettes/installation.Rmd index d68bfa2..a12df26 100644 --- a/vignettes/installation.Rmd +++ b/vignettes/installation.Rmd @@ -4,7 +4,7 @@ output: rmarkdown::html_document --- 1. `install.packages('devtools')` -2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.2.1")` +2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.2.2")` 3. `library(oncoEnrichR)`