From e26911ad9370ebc886f2f8e787b26af2301fc82f Mon Sep 17 00:00:00 2001 From: Sigve Nakken Date: Fri, 23 Sep 2022 13:41:22 +0200 Subject: [PATCH] =?UTF-8?q?Bump=20version:=201.3.0=20=E2=86=92=201.3.1?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- .github/workflows/pkgdown.yaml | 2 +- DESCRIPTION | 2 +- README.md | 2 +- pkgdown/index.md | 2 +- vignettes/installation.Rmd | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 034de41..d08ae00 100755 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.3.0 +current_version = 1.3.1 commit = True tag = False diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 4f88c8a..e4d2c8d 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - VERSION: '1.3.0' #versioned by bump2version + VERSION: '1.3.1' #versioned by bump2version name: pkgdown diff --git a/DESCRIPTION b/DESCRIPTION index c7c4965..0fcaacf 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: oncoEnrichR Type: Package Title: Cancer-dedicated gene set interpretation -Version: 1.3.0 +Version: 1.3.1 Date: 2022-09-23 Authors@R: person(given = "Sigve", family = "Nakken", role = c("aut", "cre"), email = "sigven@ifi.uio.no", diff --git a/README.md b/README.md index 99fd25d..8989c25 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ **oncoEnrichR** is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes. -Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.0) +Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.1) **oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report. diff --git a/pkgdown/index.md b/pkgdown/index.md index de4a959..f7d1ff1 100644 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -21,7 +21,7 @@ data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below). Web-based access to **oncoEnrichR** is available at -[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.0) +[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.1)
diff --git a/vignettes/installation.Rmd b/vignettes/installation.Rmd index e056380..f779f18 100644 --- a/vignettes/installation.Rmd +++ b/vignettes/installation.Rmd @@ -8,7 +8,7 @@ vignette: > --- 1. `install.packages('devtools')` -2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.3.0")` +2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.3.1")` 3. `library(oncoEnrichR)`