diff --git a/.bumpversion.cfg b/.bumpversion.cfg index e6be1dc..8f9a6a5 100755 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.3.2 +current_version = 1.4.0 commit = True tag = False diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 2bf7283..e0ab2c3 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - VERSION: '1.3.2' #versioned by bump2version + VERSION: '1.4.0' #versioned by bump2version name: pkgdown diff --git a/DESCRIPTION b/DESCRIPTION index 1f92f5d..f0c5b0d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: oncoEnrichR Type: Package Title: Cancer-dedicated gene set interpretation -Version: 1.3.2 +Version: 1.4.0 Date: 2023-02-21 Authors@R: person(given = "Sigve", family = "Nakken", role = c("aut", "cre"), email = "sigven@ifi.uio.no", diff --git a/README.md b/README.md index f05eb23..d090be1 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ **oncoEnrichR** is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes. -Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.2) +Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.4.0) **oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report. diff --git a/pkgdown/index.md b/pkgdown/index.md index a9168b9..8bf996b 100644 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -21,7 +21,7 @@ data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below). Web-based access to **oncoEnrichR** is available at -[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.3.2) +[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=galaxy-ntnu.bioinfo.no%2Ftoolshed_nels%2Frepos%2Fradmilko%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.4.0)
diff --git a/vignettes/installation.Rmd b/vignettes/installation.Rmd index 115f522..11d38c1 100644 --- a/vignettes/installation.Rmd +++ b/vignettes/installation.Rmd @@ -14,7 +14,7 @@ vignette: > ## Installation of oncoEnrichR with R commands 1. `install.packages('devtools')` -2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.3.2")` +2. `devtools::install_github('sigven/oncoEnrichR', ref = "v1.4.0")` 3. `library(oncoEnrichR)`