diff --git a/conda/env/lock/pcgr-linux-64.lock b/conda/env/lock/pcgr-linux-64.lock index 0bf787f1..19171bc7 100644 --- a/conda/env/lock/pcgr-linux-64.lock +++ b/conda/env/lock/pcgr-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 90491074670f18655d56ccc75c5b126894ff213d69129af2a1e10a7a9a16917d +# input_hash: 3005e979da5e77c53806d22d30d13d896a9710735e1f139a30997715be762655 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/bioconda/linux-64/blast-legacy-2.2.26-h9ee0642_4.tar.bz2#d35a85be775b5181e48cc3a5510cd6f3 @@ -12,17 +12,17 @@ https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.5-ha770c72_0.conda#2889 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.12-5_cp312.conda#0424ae29b104430108f5218a66db7260 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015 https://conda.anaconda.org/bioconda/linux-64/vcfanno-0.3.5-h9ee0642_1.tar.bz2#8a4602d50382770bdc2d789c3fbd1862 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_1.conda#23c255b008c4f2ae008f81edcabaca89 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#cc3573974587f12dda90d96e3e55a702 https://conda.anaconda.org/conda-forge/noarch/sysroot_linux-64-2.17-h4a8ded7_17.conda#f58cb23983633068700a756f0b5f165a https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.39-he00db2b_1.conda#3d726e8b51a1f5bfd66892a2b7d9db2d https://conda.anaconda.org/conda-forge/linux-64/binutils_linux-64-2.39-h5fc0e48_13.conda#7f25a524665e4e2f8a5f86522f8d0e31 -https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.1.0-h77fa898_1.conda#002ef4463dd1e2b44a94a4ace468f5d2 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.1-heb4867d_0.conda#db792eada25e970c46642f624b029fd7 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.2-heb4867d_0.conda#2b780c0338fc0ffa678ac82c54af51fd https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.3-h5888daf_0.conda#59f4c43bb1b5ef1c71946ff2cbf59524 -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h69a702a_1.conda#1efc0ad219877a73ef977af7dbb51f17 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.1.0-hc5f4f2c_1.conda#10a0cef64b784d6ab6da50ebca4e984d -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.1.0-hc0a3c3a_1.conda#9dbb9699ea467983ba8a4ba89b08b066 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b +https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.2.0-hd5240d6_1.conda#9822b874ea29af082e5d36098d25427d +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328 https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e https://conda.anaconda.org/conda-forge/linux-64/argtable2-2.13-hd590300_1004.conda#d7d089e975b1213c2a0f94e592b7b422 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553 @@ -34,11 +34,11 @@ https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172b https://conda.anaconda.org/conda-forge/linux-64/libevent-2.1.12-hf998b51_1.conda#a1cfcc585f0c42bf8d5546bb1dfb668d https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3 https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-he02047a_3.conda#efab66b82ec976930b96d62a976de8e7 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.1.0-h69a702a_1.conda#591e631bc1ae62c64f2ab4f66178c097 +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-14.2.0-h69a702a_1.conda#f1fd30127802683586f768875127a987 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7 https://conda.anaconda.org/conda-forge/linux-64/libntlm-1.4-h7f98852_1002.tar.bz2#e728e874159b042d92b90238a3cb0dc2 https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-10.4.0-h5246dfb_19.tar.bz2#b068ad132a509367bc9e5a200a639429 -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.1.0-h4852527_1.conda#bd2598399a70bb86d8218e95548d735e +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051 https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2#7245a044b4a1980ed83196176b78b73a https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc @@ -61,7 +61,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-he8f35ee_3.co https://conda.anaconda.org/conda-forge/linux-64/libdb-6.2.32-h9c3ff4c_0.tar.bz2#3f3258d8f841fbac63b36b75bdac1afd https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1 https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-he02047a_3.conda#9aba7960731e6b4547b3a52f812ed801 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.1.0-h69a702a_1.conda#16cec94c5992d7f42ae3f9fa8b25df8d +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-14.2.0-h69a702a_1.conda#0a7f4cd238267c88e5d69f7826a407eb https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.0-hde9e2c9_0.conda#18aa975d2094c34aef978060ae7da7d8 https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe @@ -208,11 +208,11 @@ https://conda.anaconda.org/bioconda/noarch/perl-bio-tools-run-alignment-clustalw https://conda.anaconda.org/bioconda/noarch/perl-file-listing-6.16-pl5321hdfd78af_0.tar.bz2#aee1982ba098bb88b04a68f6e06dd825 https://conda.anaconda.org/bioconda/noarch/perl-uri-5.12-pl5321hdfd78af_0.tar.bz2#6b571eaa643024a4bdaa12704928375f https://conda.anaconda.org/bioconda/linux-64/pybedtools-0.10.0-py312ha1f7cf2_2.tar.bz2#a67f6a98671372d457471d20467c6d23 -https://conda.anaconda.org/conda-forge/linux-64/scipy-1.14.1-py312h7d485d2_0.conda#7418a22e73008356d9aba99d93dfeeee +https://conda.anaconda.org/conda-forge/linux-64/scipy-1.14.1-py312h62794b6_1.conda#b43233a9e2f62fb94affe5607ea79473 https://conda.anaconda.org/bioconda/noarch/vcf2maf-umccr-1.6.21.20230511-hdfd78af_0.tar.bz2#ec3a03df0bce17c35b2a2d1436c718ea https://conda.anaconda.org/bioconda/linux-64/viennarna-2.6.4-py312pl5321h9f0f9fd_3.tar.bz2#1b43d20dbe0a4dbc6d8d958bce7bc37b https://conda.anaconda.org/bioconda/linux-64/blast-2.16.0-hc155240_2.tar.bz2#7870230d4cc0a7647eb90b6e2ebd977f -https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.1-py_0.tar.bz2#232dd7f2b511fa433635dea16ce8c3e8 +https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.2-py_0.tar.bz2#f947ead6299bd52fffab3137eeb25e7a https://conda.anaconda.org/bioconda/noarch/perl-http-message-6.36-pl5321hdfd78af_0.tar.bz2#a213d1308ffa8e0789996ae6ecda98ae https://conda.anaconda.org/bioconda/noarch/perl-net-http-6.22-pl5321hdfd78af_0.tar.bz2#f3b44f2b9932c3def346e6ad9aabe43d https://conda.anaconda.org/bioconda/noarch/perl-www-robotrules-6.02-pl5321hdfd78af_4.tar.bz2#8305f4ed6306b1125a8c8caf2f05aec8 diff --git a/conda/env/lock/pcgr-osx-64.lock b/conda/env/lock/pcgr-osx-64.lock index 42174430..45400ffc 100644 --- a/conda/env/lock/pcgr-osx-64.lock +++ b/conda/env/lock/pcgr-osx-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: osx-64 -# input_hash: 3416ed34c11552e946dbbb1337b45198d8385bf75ba3c05cd7af18f581bf4131 +# input_hash: 023d8d8d7620a225875e18d2283266c7744a6e131900002676fdebf9686850e8 @EXPLICIT https://conda.anaconda.org/conda-forge/osx-64/argtable2-2.13-h10d778d_1004.conda#7ebcbc431363dfbf9ae25e6a7205d414 https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.8.30-h8857fd0_0.conda#b7e5424e7f06547a903d28e4651dbb21 @@ -20,12 +20,12 @@ https://conda.anaconda.org/bioconda/osx-64/vcfanno-0.3.5-h527b516_1.tar.bz2#d062 https://conda.anaconda.org/conda-forge/osx-64/xz-5.2.6-h775f41a_0.tar.bz2#a72f9d4ea13d55d745ff1ed594747f10 https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2#d7e08fcf8259d742156188e8762b4d20 https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-hfdf4475_7.conda#7ed4301d437b59045be7e051a0308211 -https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.34.1-h44e7173_0.conda#611618b0b3949f947da65c96ff9c51fb -https://conda.anaconda.org/conda-forge/osx-64/libcxx-19.1.1-hf95d169_0.conda#2b09d0f92cae6df4b1670adcaca9c38c +https://conda.anaconda.org/conda-forge/osx-64/c-ares-1.34.2-h32b1619_0.conda#724edfea6dde646c1faf2ce1423e0faa +https://conda.anaconda.org/conda-forge/osx-64/libcxx-19.1.2-hf95d169_0.conda#8bdfb741a2cdbd0a4e7b7dc30fbc0d6c https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.6.3-hac325c4_0.conda#c1db99b0a94a2f23bd6ce39e2d314e07 https://conda.anaconda.org/conda-forge/osx-64/libintl-0.22.5-hdfe23c8_3.conda#52d4d643ed26c07599736326c46bf12f https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.2.13-h87427d6_6.conda#c0ef3c38a80c02ae1d86588c055184fc -https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-19.1.1-h545e0da_0.conda#3f3e4a599dd2638a945fc5821090db07 +https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-19.1.2-hf78d878_0.conda#ca5f963676a9ad5383b7441368e1d107 https://conda.anaconda.org/conda-forge/osx-64/macports-legacy-support-1.3.0-hfdf4475_0.conda#08f41941a3154f2ed18f61e4a4cb8776 https://conda.anaconda.org/conda-forge/osx-64/ncurses-6.5-hf036a51_1.conda#e102bbf8a6ceeaf429deab8032fc8977 https://conda.anaconda.org/conda-forge/osx-64/openssl-1.1.1w-h8a1eda9_0.conda#83cdb687c0caa41dad9d4941afcdfd64 @@ -210,9 +210,9 @@ https://conda.anaconda.org/bioconda/osx-64/cyvcf2-0.30.16-py310h74db330_1.tar.bz https://conda.anaconda.org/conda-forge/osx-64/pandas-2.2.3-py310ha53a654_1.conda#b96d54d99c8bd2b0840b2671ab69f4cb https://conda.anaconda.org/bioconda/noarch/perl-libwww-perl-6.67-pl5321hdfd78af_0.tar.bz2#9493077e9e1dae0017f0d4cd9baf7de6 https://conda.anaconda.org/bioconda/osx-64/pybedtools-0.10.0-py310h0b3aad1_2.tar.bz2#2674eda3d1eb4d1445dfcc11ae51b28b -https://conda.anaconda.org/conda-forge/osx-64/scipy-1.14.1-py310h59907b9_0.conda#77c1165640a83f50b4cfefaf8fa64801 +https://conda.anaconda.org/conda-forge/osx-64/scipy-1.14.1-py310h9ad1863_1.conda#481a6063c89dd8864258ff46839c4a3a https://conda.anaconda.org/conda-forge/osx-64/compiler-rt-12.0.1-he01351e_0.tar.bz2#aa2cb3794dae4a09f19c3b7169b5df1f -https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.1-py_0.tar.bz2#232dd7f2b511fa433635dea16ce8c3e8 +https://conda.anaconda.org/pcgr/noarch/pcgr-2.1.2-py_0.tar.bz2#f947ead6299bd52fffab3137eeb25e7a https://conda.anaconda.org/bioconda/noarch/perl-xml-dom-1.46-pl5321hdfd78af_1.tar.bz2#45b7ce435727456727f45b3e2121b23b https://conda.anaconda.org/bioconda/osx-64/t-coffee-12.00.7fb08c2-h26a2512_0.tar.bz2#fe6f3532da0e9d3868b58ecd07f33744 https://conda.anaconda.org/bioconda/noarch/vcf2tsvpy-0.6.1-pyhda70652_0.tar.bz2#cb9612a58cefb7e2a144c759027c0a94 diff --git a/conda/env/lock/pcgrr-linux-64.lock b/conda/env/lock/pcgrr-linux-64.lock index 2f54e824..dea854e3 100644 --- a/conda/env/lock/pcgrr-linux-64.lock +++ b/conda/env/lock/pcgrr-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: ef820f14908b95738a90a72c6d0815c96fcc2278122805579f5c1b8580c9020e +# input_hash: 3740be8b808c809da5f9a30fc92451ac7491c60067e47d789870fe6e83969135 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/noarch/_r-mutex-1.0.1-anacondar_1.tar.bz2#19f9db5f4f1b7f5ef5f6d67207f25f38 @@ -17,22 +17,22 @@ https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.13-5_cp313.conda#38 https://conda.anaconda.org/conda-forge/noarch/tzdata-2024b-hc8b5060_0.conda#8ac3367aafb1cc0a068483c580af8015 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.43-h712a8e2_1.conda#83e1364586ceb8d0739fbc85b5c95837 -https://conda.anaconda.org/conda-forge/noarch/libgcc-devel_linux-64-14.1.0-h5d3d1c9_101.conda#713834677de996ac1bc1b0b305ba46ba -https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.1.0-h77fa898_1.conda#23c255b008c4f2ae008f81edcabaca89 -https://conda.anaconda.org/conda-forge/noarch/libstdcxx-devel_linux-64-14.1.0-h5d3d1c9_101.conda#e007246a554aaf42f73fbfd4be8db3e4 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https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.12.7-he7c6b58_4.conda#08a9265c637230c37cb1be4a6cad4536 @@ -105,7 +105,7 @@ https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0.2-py313h536fd9c_1.con https://conda.anaconda.org/conda-forge/noarch/setuptools-75.1.0-pyhd8ed1ab_0.conda#d5cd48392c67fb6849ba459c2c2b671f https://conda.anaconda.org/conda-forge/noarch/toml-0.10.2-pyhd8ed1ab_0.tar.bz2#f832c45a477c78bebd107098db465095 https://conda.anaconda.org/conda-forge/noarch/tomlkit-0.13.2-pyha770c72_0.conda#0062a5f3347733f67b0f33ca48cc21dd -https://conda.anaconda.org/conda-forge/noarch/xmltodict-0.14.1-pyhd8ed1ab_0.conda#7b0fe5a16177e97bb0c71acf55b82197 +https://conda.anaconda.org/conda-forge/noarch/xmltodict-0.14.2-pyhd8ed1ab_0.conda#cf0444b8bf96cb4c8162be3bfbf5b462 https://conda.anaconda.org/conda-forge/linux-64/curl-8.10.1-hbbe4b11_0.conda#73c561c6b84bda71776c9fa21517e7eb https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-9.0.0-hda332d3_1.conda#76b32dcf243444aea9c6b804bcfa40b8 https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-24_linux64_openblas.conda#f5b8822297c9c790cec0795ca1fc9be6 @@ -172,7 +172,7 @@ https://conda.anaconda.org/conda-forge/noarch/r-plogr-0.2.0-r43hc72bb7e_1006.con https://conda.anaconda.org/conda-forge/linux-64/r-png-0.1_8-r43h21f035c_2.conda#bb38ba000f70e6776d546e1b41b8ce4c https://conda.anaconda.org/conda-forge/noarch/r-pracma-2.4.4-r43hc72bb7e_1.conda#b01b8a12320a725816c72396eb6e0ad2 https://conda.anaconda.org/conda-forge/linux-64/r-proxy-0.4_27-r43hb1dbf0f_3.conda#d7b831353a7bfbbe20980873e81fef97 -https://conda.anaconda.org/conda-forge/linux-64/r-ps-1.7.7-r43hdb488b9_0.conda#a6b5dc229feb1303b373dd738490928d +https://conda.anaconda.org/conda-forge/linux-64/r-ps-1.8.0-r43h2b5f3a1_0.conda#853db8d45fbc748d1a14229bfb817a7d 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