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organismList.txt
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organismList.txt
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hsa Homo sapiens (human)
ptr Pan troglodytes (chimpanzee)
pps Pan paniscus (bonobo)
ggo Gorilla gorilla gorilla (western lowland gorilla)
pon Pongo abelii (Sumatran orangutan)
nle Nomascus leucogenys (northern white-cheeked gibbon)
mcc Macaca mulatta (rhesus monkey)
mcf Macaca fascicularis (crab-eating macaque)
mthb Macaca thibetana thibetana (Pere Davids macaque)
csab Chlorocebus sabaeus (green monkey)
caty Cercocebus atys (sooty mangabey)
panu Papio anubis (olive baboon)
tge Theropithecus gelada (gelada)
rro Rhinopithecus roxellana (golden snub-nosed monkey)
rbb Rhinopithecus bieti (black snub-nosed monkey)
tfn Trachypithecus francoisi (Francoiss langur)
pteh Piliocolobus tephrosceles (Ugandan red Colobus)
cjc Callithrix jacchus (white-tufted-ear marmoset)
sbq Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
csyr Carlito syrichta (Philippine tarsier)
mmur Microcebus murinus (gray mouse lemur)
lcat Lemur catta (Ring-tailed lemur)
oga Otolemur garnettii (small-eared galago)
mmu Mus musculus (house mouse)
mcal Mus caroli (Ryukyu mouse)
mpah Mus pahari (shrew mouse)
rno Rattus norvegicus (rat)
mcoc Mastomys coucha (southern multimammate mouse)
mun Meriones unguiculatus (Mongolian gerbil)
cge Cricetulus griseus (Chinese hamster)
maua Mesocricetus auratus (golden hamster)
pleu Peromyscus leucopus (white-footed mouse)
morg Microtus oregoni (creeping vole)
mfot Microtus fortis (reed vole)
aamp Arvicola amphibius (Eurasian water vole)
ngi Nannospalax galili (Upper Galilee mountains blind mole rat)
hgl Heterocephalus glaber (naked mole-rat)
cpoc Cavia porcellus (domestic guinea pig)
ccan Castor canadensis (American beaver)
dord Dipodomys ordii (Ords kangaroo rat)
dsp Dipodomys spectabilis (banner-tailed kangaroo rat)
ncar Sciurus carolinensis (gray squirrel)
ocu Oryctolagus cuniculus (rabbit)
opi Ochotona princeps (American pika)
tup Tupaia chinensis (Chinese tree shrew)
cfa Canis lupus familiaris (dog)
clud Canis lupus dingo (dingo)
vvp Vulpes vulpes (red fox)
vlg Vulpes lagopus (Arctic fox)
aml Ailuropoda melanoleuca (giant panda)
umr Ursus maritimus (polar bear)
uah Ursus arctos horribilis (North American brown bear)
uar Ursus americanus (American black bear)
elk Enhydra lutris kenyoni (northern sea otter)
llv Lutra lutra (Eurasian river otter)
mpuf Mustela putorius furo (domestic ferret)
oro Odobenus rosmarus divergens (Pacific walrus)
eju Eumetopias jubatus (Steller sea lion)
zca Zalophus californianus (California sea lion)
mlx Mirounga leonina (Southern elephant seal)
nsu Neomonachus schauinslandi (Hawaiian monk seal)
fca Felis catus (domestic cat)
pyu Puma yagouaroundi (jaguarundi)
pbg Prionailurus bengalensis (leopard cat)
lruf Lynx rufus (bobcat)
ptg Panthera tigris altaica (Amur tiger)
ppad Panthera pardus (leopard)
aju Acinonyx jubatus (cheetah)
hhv Hyaena hyaena (striped hyena)
bta Bos taurus (cow)
bom Bos mutus (wild yak)
biu Bos indicus (zebu cattle)
bbub Bubalus bubalis (water buffalo)
chx Capra hircus (goat)
oas Ovis aries (sheep)
oda Oryx dammah (scimitar-horned oryx)
ccad Cervus canadensis (wapiti)
ssc Sus scrofa (pig)
cfr Camelus ferus (Wild Bactrian camel)
cbai Camelus bactrianus (Bactrian camel)
cdk Camelus dromedarius (Arabian camel)
vpc Vicugna pacos (alpaca)
bacu Balaenoptera acutorostrata scammoni (minke whale)
lve Lipotes vexillifer (Yangtze River dolphin)
oor Orcinus orca (killer whale)
dle Delphinapterus leucas (beluga whale)
pcad Physeter catodon (sperm whale)
psiu Phocoena sinus (vaquita)
ecb Equus caballus (horse)
epz Equus przewalskii (Przewalskis horse)
eai Equus asinus (ass)
myb Myotis brandtii (Brandts bat)
myd Myotis davidii (Davids myotis)
mmyo Myotis myotis (greater mouse-eared bat)
mlf Myotis lucifugus (little brown bat)
mna Miniopterus natalensis (Natal long-fingered bat)
pkl Pipistrellus kuhlii (Kuhls pipistrelle)
hai Hipposideros armiger (great roundleaf bat)
dro Desmodus rotundus (common vampire bat)
shon Sturnira hondurensis
ajm Artibeus jamaicensis (Jamaican fruit-eating bat)
pdic Phyllostomus discolor (pale spear-nosed bat)
phas Phyllostomus hastatus (greater spear-nosed bat)
mmf Molossus molossus (Pallass mastiff bat)
rfq Rhinolophus ferrumequinum (greater horseshoe bat)
pale Pteropus alecto (black flying fox)
pgig Pteropus giganteus (Indian flying fox)
pvp Pteropus vampyrus (large flying fox)
ray Rousettus aegyptiacus (Egyptian rousette)
mjv Manis javanica (Malayan pangolin)
tod Talpa occidentalis (Iberian mole)
sara Sorex araneus (European shrew)
lav Loxodonta africana (African savanna elephant)
tmu Trichechus manatus latirostris (Florida manatee)
dnm Dasypus novemcinctus (nine-banded armadillo)
mdo Monodelphis domestica (gray short-tailed opossum)
gas Gracilinanus agilis (agile gracile opossum)
shr Sarcophilus harrisii (Tasmanian devil)
pcw Phascolarctos cinereus (koala)
oaa Ornithorhynchus anatinus (platypus)
gga Gallus gallus (chicken)
pcoc Phasianus colchicus (Ring-necked pheasant)
mgp Meleagris gallopavo (turkey)
cjo Coturnix japonica (Japanese quail)
nmel Numida meleagris (helmeted guineafowl)
apla Anas platyrhynchos (mallard)
acyg Anser cygnoides domesticus (swan goose)
aful Aythya fuligula (tufted duck)
tgu Taeniopygia guttata (zebra finch)
lsr Lonchura striata domestica (Bengalese finch)
scan Serinus canaria (common canary)
pmoa Passer montanus (Eurasian tree sparrow)
otc Onychostruthus taczanowskii (white-rumped snowfinch)
pruf Pyrgilauda ruficollis (rufous-necked snowfinch)
gfr Geospiza fortis (medium ground-finch)
fab Ficedula albicollis (collared flycatcher)
phi Pseudopodoces humilis (Tibetan ground-tit)
pmaj Parus major (Great Tit)
ccae Cyanistes caeruleus (blue tit)
ccw Corvus cornix (hooded crow)
cbrc Corvus brachyrhynchos (American crow)
etl Empidonax traillii (willow flycatcher)
zab Zonotrichia albicollis (white-throated sparrow)
achl Acanthisitta chloris (rifleman)
fpg Falco peregrinus (peregrine falcon)
fch Falco cherrug (Saker falcon)
clv Columba livia (rock pigeon)
egz Egretta garzetta (little egret)
nni Nipponia nippon (crested ibis)
plet Phaethon lepturus (White-tailed tropicbird)
pcri Pelecanus crispus (Dalmatian pelican)
acun Athene cunicularia (burrowing owl)
tala Tyto alba (Barn owl)
padl Pygoscelis adeliae (Adelie penguin)
afor Aptenodytes forsteri (emperor penguin)
achc Aquila chrysaetos chrysaetos (golden eagle)
hald Haliaeetus albicilla (white-tailed eagle)
ccri Cariama cristata (Red-legged seriema)
csti Colius striatus (speckled mousebird)
ehs Eurypyga helias (sunbittern)
cmac Chlamydotis macqueenii (Macqueens bustard)
mui Mesitornis unicolor (brown roatelo)
fga Fulmarus glacialis (Northern fulmar)
gste Gavia stellata (red-throated loon)
ldi Leptosomus discolor (cuckoo roller)
mnb Merops nubicus (carmine bee-eater)
oha Opisthocomus hoazin (hoatzin)
nnt Nestor notabilis (Kea)
dpub Dryobates pubescens (Downy woodpecker)
pguu Pterocles gutturalis (yellow-throated sandgrouse)
acar Antrostomus carolinensis (chuck-wills-widow)
avit Apaloderma vittatum (bar-tailed trogon)
cvf Charadrius vociferus (killdeer)
aam Apteryx mantelli mantelli (North Island brown kiwi)
arow Apteryx rowi (Okarito brown kiwi)
npd Nothoprocta perdicaria (Chilean tinamou)
tgt Tinamus guttatus (white-throated tinamou)
dne Dromaius novaehollandiae (emu)
scam Struthio camelus australis (South African ostrich)
asn Alligator sinensis (Chinese alligator)
amj Alligator mississippiensis (American alligator)
cpoo Crocodylus porosus (Australian saltwater crocodile)
ggn Gavialis gangeticus (Gharial)
pss Pelodiscus sinensis (Chinese soft-shelled turtle)
cmy Chelonia mydas (green sea turtle)
cpic Chrysemys picta (western painted turtle)
tst Trachemys scripta elegans (red-eared slider)
cabi Chelonoidis abingdonii (Abingdon island giant tortoise)
mrv Mauremys reevesii (Reevess turtle)
acs Anolis carolinensis (green anole)
pvt Pogona vitticeps (central bearded dragon)
sund Sceloporus undulatus (fence lizard)
pbi Python bivittatus (Burmese python)
pmur Protobothrops mucrosquamatus (Taiwan habu)
ctig Crotalus tigris (Tiger rattlesnake)
tsr Thamnophis sirtalis (common garter snake)
pgut Pantherophis guttatus (corn snake)
vko Varanus komodoensis (Komodo dragon)
pmua Podarcis muralis (common wall lizard)
zvi Zootoca vivipara (common lizard)
gja Gekko japonicus (Schlegels Japanese gecko)
stow Sphaerodactylus townsendi (Townsends least gecko)
xla Xenopus laevis (African clawed frog)
xtr Xenopus tropicalis (tropical clawed frog)
npr Nanorana parkeri (Xizang Plateau frog)
rtem Rana temporaria (common frog)
bbuf Bufo bufo (common toad)
bgar Bufo gargarizans (Asiatic toad)
dre Danio rerio (zebrafish)
srx Sinocyclocheilus rhinocerous
sanh Sinocyclocheilus anshuiensis
sgh Sinocyclocheilus grahami (golden-line barbel)
ccar Cyprinus carpio (common carp)
caua Carassius auratus (goldfish)
pprm Pimephales promelas (fathead minnow)
mamb Megalobrama amblycephala (Wuchang bream)
ipu Ictalurus punctatus (channel catfish)
phyp Pangasianodon hypophthalmus (striped catfish)
smeo Silurus meridionalis (southern catfish)
tfd Tachysurus fulvidraco (yellow catfish)
amex Astyanax mexicanus (Mexican tetra)
eee Electrophorus electricus (electric eel)
tru Takifugu rubripes (torafugu)
tng Tetraodon nigroviridis (spotted green pufferfish)
lco Larimichthys crocea (large yellow croaker)
ncc Notothenia coriiceps (black rockcod)
cgob Cottoperca gobio
ely Epinephelus lanceolatus (giant grouper)
efo Epinephelus fuscoguttatus (brown-marbled grouper)
plep Plectropomus leopardus (leopard coralgrouper)
sluc Sander lucioperca (pikeperch)
ecra Etheostoma cragini (Arkansas darter)
esp Etheostoma spectabile (orangethroat darter)
pflv Perca flavescens (yellow perch)
gat Gasterosteus aculeatus (three-spined stickleback)
ppug Pungitius pungitius (ninespine stickleback)
msam Micropterus salmoides (largemouth bass)
cud Cheilinus undulatus (humphead wrasse)
alat Acanthopagrus latus (yellowfin seabream)
mze Maylandia zebra (zebra mbuna)
onl Oreochromis niloticus (Nile tilapia)
oau Oreochromis aureus (blue tilapia)
ola Oryzias latipes (Japanese medaka)
oml Oryzias melastigma (Indian medaka)
xma Xiphophorus maculatus (southern platyfish)
xco Xiphophorus couchianus (Monterrey platyfish)
xhe Xiphophorus hellerii (green swordtail)
pret Poecilia reticulata (guppy)
pfor Poecilia formosa (Amazon molly)
plai Poecilia latipinna (sailfin molly)
pmei Poecilia mexicana (shortfin molly)
gaf Gambusia affinis (western mosquitofish)
cvg Cyprinodon variegatus (sheepshead minnow)
ctul Cyprinodon tularosa (White Sands pupfish)
gmu Girardinichthys multiradiatus (darkedged splitfin)
nfu Nothobranchius furzeri (turquoise killifish)
kmr Kryptolebias marmoratus (mangrove rivulus)
alim Austrofundulus limnaeus (annual killifish)
nwh Nematolebias whitei (Rio pearlfish)
aoce Amphiprion ocellaris (clown anemonefish)
mcep Mugil cephalus (flathead mullet)
csem Cynoglossus semilaevis (tongue sole)
pov Paralichthys olivaceus (Japanese flounder)
ssen Solea senegalensis (Senegalese sole)
hhip Hippoglossus hippoglossus (Atlantic halibut)
hsp Hippoglossus stenolepis (Pacific halibut)
lcf Lates calcarifer (barramundi perch)
sdu Seriola dumerili (greater amberjack)
slal Seriola lalandi dorsalis (Yellowtail amberjack)
xgl Xiphias gladius (swordfish)
hcq Hippocampus comes (tiger tail seahorse)
bpec Boleophthalmus pectinirostris (great blue-spotted mudskipper)
malb Monopterus albus (swamp eel)
bspl Betta splendens (Siamese fighting fish)
sasa Salmo salar (Atlantic salmon)
stru Salmo trutta (river trout)
otw Oncorhynchus tshawytscha (Chinook salmon)
omy Oncorhynchus mykiss (rainbow trout)
ogo Oncorhynchus gorbuscha (pink salmon)
one Oncorhynchus nerka (sockeye salmon)
salp Salvelinus sp. IW2-2015 (Arctic char)
snh Salvelinus namaycush (lake trout)
cclu Coregonus clupeaformis (lake whitefish)
els Esox lucius (northern pike)
sfm Scleropages formosus (Asian bonytongue)
pki Paramormyrops kingsleyae
aang Anguilla anguilla (European eel)
loc Lepisosteus oculatus (spotted gar)
pspa Polyodon spathula (Mississippi paddlefish)
arut Acipenser ruthenus (sterlet)
lcm Latimeria chalumnae (coelacanth)
cmk Callorhinchus milii (elephant shark)
rtp Rhincodon typus (whale shark)
bfo Branchiostoma floridae (Florida lancelet)
bbel Branchiostoma belcheri (Belchers lancelet)
cin Ciona intestinalis (yellow sea squirt)
sclv Styela clava (leathery sea squirt)
spu Strongylocentrotus purpuratus (purple sea urchin)
aplc Acanthaster planci (crown-of-thorns starfish)
sko Saccoglossus kowalevskii (acorn worm)
dme Drosophila melanogaster (fruit fly)
der Drosophila erecta
dse Drosophila sechellia
dsi Drosophila simulans
dya Drosophila yakuba
dan Drosophila ananassae
dsr Drosophila serrata
dpo Drosophila pseudoobscura
dpe Drosophila persimilis
dmn Drosophila miranda
dwi Drosophila willistoni
dgr Drosophila grimshawi
dmo Drosophila mojavensis
daz Drosophila arizonae
dnv Drosophila navojoa
dhe Drosophila hydei
dvi Drosophila virilis
ccat Ceratitis capitata (Mediterranean fruit fly)
bod Bactrocera oleae (olive fruit fly)
rze Rhagoletis zephyria (snowberry fruit fly)
mde Musca domestica (house fly)
scac Stomoxys calcitrans (stable fly)
lcq Lucilia cuprina (Australian sheep blowfly)
lsq Lucilia sericata (common green bottle fly)
his Hermetia illucens (black soldier fly)
aga Anopheles gambiae (malaria mosquito)
acoz Anopheles coluzzii
aara Anopheles arabiensis
aste Anopheles stephensi (Asian malaria mosquito)
aag Aedes aegypti (yellow fever mosquito)
aalb Aedes albopictus (Asian tiger mosquito)
cqu Culex quinquefasciatus (southern house mosquito)
cpii Culex pipiens pallens (Northern house mosquito)
cns Contarinia nasturtii (swede midge)
bcoo Bradysia coprophila
ame Apis mellifera (honey bee)
acer Apis cerana (Asiatic honeybee)
alab Apis laboriosa (Himalayan honeybee)
bim Bombus impatiens (common eastern bumble bee)
bbif Bombus bifarius (two-form bumblebee)
bvk Bombus vosnesenskii (yellow-faced bumblebee)
bvan Bombus vancouverensis nearcticus
bter Bombus terrestris (buff-tailed bumblebee)
bpyo Bombus pyrosoma
ccal Ceratina calcarata (carpenter bee)
obb Osmia bicornis bicornis (red mason bee)
mgen Megalopta genalis
nmea Nomia melanderi (Alkali bee)
cgig Colletes gigas
soc Solenopsis invicta (red fire ant)
mpha Monomorium pharaonis (pharaoh ant)
aec Acromyrmex echinatior (Panamanian leafcutter ant)
acep Atta cephalotes (leaf cutting ant)
pbar Pogonomyrmex barbatus (red harvester ant)
vem Vollenhovia emeryi
hst Harpegnathos saltator (Jerdons jumping ant)
dqu Dinoponera quadriceps
cfo Camponotus floridanus (Florida carpenter ant)
fex Formica exsecta (narrow-headed ant)
lhu Linepithema humile (Argentine ant)
pgc Pseudomyrmex gracilis (graceful twig ant)
obo Ooceraea biroi (clonal raider ant)
pcf Polistes canadensis
pfuc Polistes fuscatus (common paper wasp)
vps Vespula pensylvanica (western yellowjacket)
nvi Nasonia vitripennis (jewel wasp)
csol Ceratosolen solmsi marchali (fig wasp)
tpre Trichogramma pretiosum
mdl Microplitis demolitor
cglo Cotesia glomerata
fas Fopius arisanus
dam Diachasma alloeum
agif Aphidius gifuensis
lht Leptopilina heterotoma
ccin Cephus cinctus (wheat stem sawfly)
tca Tribolium castaneum (red flour beetle)
dpa Dendroctonus ponderosae (mountain pine beetle)
soy Sitophilus oryzae (rice weevil)
atd Aethina tumida (small hive beetle)
cset Coccinella septempunctata (seven-spotted ladybird)
agb Anoplophora glabripennis (Asian longhorned beetle)
ldc Leptinotarsa decemlineata (Colorado potato beetle)
nvl Nicrophorus vespilloides (burying beetle)
apln Agrilus planipennis (emerald ash borer)
ppyr Photinus pyralis (common eastern firefly)
otu Onthophagus taurus (bull-headed dung beetle)
bmor Bombyx mori (domestic silkworm)
bman Bombyx mandarina (wild silkworm)
msex Manduca sexta (tobacco hornworm)
dpl Danaus plexippus (monarch butterfly)
bany Bicyclus anynana (squinting bush brown)
niq Nymphalis io (European peacock)
pmac Papilio machaon (common yellow swallowtail)
ppot Papilio polytes (common Mormon)
pxu Papilio xuthus (Asian swallowtail)
prap Pieris rapae (cabbage white)
zce Zerene cesonia (dogface butterfly)
haw Helicoverpa armigera (cotton bollworm)
hze Helicoverpa zea (corn earworm)
tnl Trichoplusia ni (cabbage looper)
sliu Spodoptera litura (tobacco cutworm)
ofu Ostrinia furnacalis (Asian corn borer)
pxy Plutella xylostella (diamondback moth)
cfel Ctenocephalides felis (cat flea)
api Acyrthosiphon pisum (pea aphid)
dnx Diuraphis noxia (Russian wheat aphid)
ags Aphis gossypii (cotton aphid)
rmd Rhopalosiphum maidis (corn leaf aphid)
btab Bemisia tabaci (sweet potato whitefly)
dci Diaphorina citri (Asian citrus psyllid)
clec Cimex lectularius (bed bug)
hhal Halyomorpha halys (brown marmorated stink bug)
nlu Nilaparvata lugens (brown planthopper)
phu Pediculus humanus corporis (human body louse)
foc Frankliniella occidentalis (western flower thrips)
tpal Thrips palmi (melon thrips)
zne Zootermopsis nevadensis (dampwood termite)
csec Cryptotermes secundus (drywood termite)
fcd Folsomia candida
dpx Daphnia pulex (common water flea)
dmk Daphnia magna (water flea)
pvm Penaeus vannamei (Pacific white shrimp)
pja Penaeus japonicus (kuruma prawn)
pchn Penaeus chinensis (fleshy prawn)
hame Homarus americanus (American lobster)
pcla Procambarus clarkii (red swamp crayfish)
ptru Portunus trituberculatus (swimming crab)
hazt Hyalella azteca
eaf Eurytemora affinis
lsm Lepeophtheirus salmonis (salmon louse)
ppoi Pollicipes pollicipes (gooseneck barnacle)
isc Ixodes scapularis (black-legged tick)
dsv Dermacentor silvarum
rsan Rhipicephalus sanguineus (brown dog tick)
rmp Rhipicephalus microplus (southern cattle tick)
vde Varroa destructor (honeybee mite)
vja Varroa jacobsoni
tut Tetranychus urticae (two-spotted spider mite)
dpte Dermatophagoides pteronyssinus (European house dust mite)
dfr Dermatophagoides farinae (American house dust mite)
cscu Centruroides sculpturatus (bark scorpion)
ptep Parasteatoda tepidariorum (common house spider)
sdm Stegodyphus dumicola
cel Caenorhabditis elegans (nematode)
cbr Caenorhabditis briggsae (nematode)
bmy Brugia malayi (filaria)
loa Loa loa (eye worm)
nai Necator americanus (New World hookworm)
tsp Trichinella spiralis
hro Helobdella robusta
lgi Lottia gigantea (owl limpet)
pcan Pomacea canaliculata (golden apple snail)
bgt Biomphalaria glabrata (bloodfluke planorb)
gae Gigantopelta aegis (peltospirid snail)
hrf Haliotis rufescens (red abalone)
hrj Haliotis rubra (blacklip abalone)
crg Crassostrea gigas (Pacific oyster)
myi Mizuhopecten yessoensis (Yesso scallop)
pmax Pecten maximus (king scallop)
mmer Mercenaria mercenaria (northern quahog)
obi Octopus bimaculoides (California two-spot octopus)
osn Octopus sinensis (East Asian common octopus)
lak Lingula anatina
smm Schistosoma mansoni
shx Schistosoma haematobium (urinary blood fluke)
ovi Opisthorchis viverrini (Southeast Asian liver fluke)
egl Echinococcus granulosus (hydatid tapeworm)
nve Nematostella vectensis (starlet sea anemone)
epa Exaiptasia diaphana (Aiptasia)
aten Actinia tenebrosa (Australian red waratah sea anemone)
adf Acropora digitifera (stony coral)
amil Acropora millepora
pdam Pocillopora damicornis (lace coral)
spis Stylophora pistillata (Smooth Cauliflower Coral)
dgt Dendronephthya gigantea (soft corals)
xen Xenia sp. Carnegie-2017 (soft corals)
hmg Hydra vulgaris (swiftwater hydra)
tad Trichoplax adhaerens (placozoan)
aqu Amphimedon queenslandica (sponge)
ath Arabidopsis thaliana (thale cress)
aly Arabidopsis lyrata (lyrate rockcress)
crb Capsella rubella (pink shepherds-purse)
csat Camelina sativa (false flax)
eus Eutrema salsugineum (saltwater cress)
brp Brassica rapa (field mustard)
bna Brassica napus (rape)
boe Brassica oleracea (wild cabbage)
rsz Raphanus sativus (radish)
thj Tarenaya hassleriana (spider flower)
cpap Carica papaya (papaya)
cit Citrus sinensis (Valencia orange)
cic Citrus clementina (mandarin orange)
pvy Pistacia vera (pistachio)
minc Mangifera indica (mango)
tcc Theobroma cacao (cacao)
gra Gossypium raimondii
ghi Gossypium hirsutum (upland cotton)
gab Gossypium arboreum (tree cotton)
dzi Durio zibethinus (durian)
egr Eucalyptus grandis (rose gum)
gmx Glycine max (soybean)
gsj Glycine soja (wild soybean)
pvu Phaseolus vulgaris (common bean)
vra Vigna radiata (mung bean)
var Vigna angularis (adzuki bean)
vun Vigna unguiculata (cowpea)
ccaj Cajanus cajan (pigeon pea)
aprc Abrus precatorius (Indian licorice)
mtr Medicago truncatula (barrel medic)
cam Cicer arietinum (chickpea)
lja Lotus japonicus
adu Arachis duranensis
aip Arachis ipaensis
ahf Arachis hypogaea (peanut)
lang Lupinus angustifolius (narrow-leaved blue lupine)
fve Fragaria vesca (woodland strawberry)
rcn Rosa chinensis (China rose)
pper Prunus persica (peach)
pmum Prunus mume (Japanese apricot)
pavi Prunus avium (sweet cherry)
pdul Prunus dulcis (almond)
mdm Malus domestica (apple)
pxb Pyrus x bretschneideri (Chinese white pear)
zju Ziziphus jujuba (Chinese jujube)
mnt Morus notabilis
csv Cucumis sativus (cucumber)
cmo Cucumis melo (muskmelon)
bhj Benincasa hispida (wax gourd)
mcha Momordica charantia (bitter melon)
cmax Cucurbita maxima (winter squash)
cmos Cucurbita moschata (crookneck pumpkin)
cpep Cucurbita pepo subsp. pepo (vegetable marrow)
rcu Ricinus communis (castor bean)
jcu Jatropha curcas (Barbados nut)
hbr Hevea brasiliensis (rubber tree)
mesc Manihot esculenta (cassava)
pop Populus trichocarpa (black cottonwood)
peu Populus euphratica (Euphrates poplar)
palz Populus alba (white poplar)
jre Juglans regia (English walnut)
qsu Quercus suber (cork oak)
qlo Quercus lobata (valley oak)
twl Tripterygium wilfordii (thunder duke vine)
vvi Vitis vinifera (wine grape)
vri Vitis riparia (riverbank grape)
sly Solanum lycopersicum (tomato)
spen Solanum pennellii
sot Solanum tuberosum (potato)
sstn Solanum stenotomum
cann Capsicum annuum (peppers)
nta Nicotiana tabacum (common tobacco)
nsy Nicotiana sylvestris (wood tobacco)
nto Nicotiana tomentosiformis
nau Nicotiana attenuata (coyote tobacco)
ini Ipomoea nil (Japanese morning glory)
itr Ipomoea triloba (trilobed morning glory)
sind Sesamum indicum (sesame)
oeu Olea europaea var. sylvestris (wild olive)
egt Erythranthe guttata (spotted monkey flower)
sspl Salvia splendens (scarlet sage)
han Helianthus annuus (common sunflower)
ecad Erigeron canadensis (horseweed)
lsv Lactuca sativa (garden lettuce)
ccav Cynara cardunculus var. scolymus (artichoke)
dcr Daucus carota (carrot)
csin Camellia sinensis (tea plant)
bvg Beta vulgaris (sugar beet)
soe Spinacia oleracea (spinach)
cqi Chenopodium quinoa (quinoa)
nnu Nelumbo nucifera (sacred lotus)
ming Macadamia integrifolia (macadamia nut)
tss Telopea speciosissima (New South Wales waratah)
psom Papaver somniferum (opium poppy)
ncol Nymphaea colorata (blue-petal water lily)
osa Oryza sativa japonica (Japanese rice) (RefSeq)
dosa Oryza sativa japonica (Japanese rice) (RAPDB)
obr Oryza brachyantha (malo sina)
bdi Brachypodium distachyon (stiff brome)
ats Aegilops tauschii (wheat D)
tdc Triticum dicoccoides (wild emmer wheat)
taes Triticum aestivum (bread wheat)
tua Triticum urartu (red wild einkorn wheat)
sbi Sorghum bicolor (sorghum)
zma Zea mays (maize)
sita Setaria italica (foxtail millet)
svs Setaria viridis (green foxtail)
pvir Panicum virgatum (switchgrass)
phai Panicum hallii (Halls panicgrass)
pda Phoenix dactylifera (date palm)
egu Elaeis guineensis (African oil palm)
mus Musa acuminata (wild Malaysian banana)
dct Dendrobium catenatum
peq Phalaenopsis equestris
aof Asparagus officinalis (garden asparagus)
atr Amborella trichopoda
smo Selaginella moellendorffii
ppp Physcomitrium patens (spreading earthmoss)
cre Chlamydomonas reinhardtii
vcn Volvox carteri f. nagariensis
mng Monoraphidium neglectum
csl Coccomyxa subellipsoidea
cvr Chlorella variabilis
apro Auxenochlorella protothecoides
olu Ostreococcus lucimarinus
ota Ostreococcus tauri
bpg Bathycoccus prasinos
mis Micromonas commoda
mpp Micromonas pusilla
cme Cyanidioschyzon merolae
gsl Galdieria sulphuraria
ccp Chondrus crispus (carragheen)
sce Saccharomyces cerevisiae (budding yeast)
seub Saccharomyces eubayanus
spao Saccharomyces paradoxus
ago Ashbya gossypii (Eremothecium gossypii)
erc Eremothecium cymbalariae
kla Kluyveromyces lactis
kmx Kluyveromyces marxianus
lth Lachancea thermotolerans
vpo Vanderwaltozyma polyspora
zro Zygosaccharomyces rouxii
cgr Candida glabrata
ncs Naumovozyma castellii
ndi Naumovozyma dairenensis
tpf Tetrapisispora phaffii
tbl Tetrapisispora blattae
tdl Torulaspora delbrueckii
tgb Torulaspora globosa
kaf Kazachstania africana
kng Kazachstania naganishii
zmk Zygotorulaspora mrakii
ppa Komagataella phaffii
dha Debaryomyces hansenii
pic Scheffersomyces stipitis
pgu Meyerozyma guilliermondii
spaa Spathaspora passalidarum
lel Lodderomyces elongisporus
cal Candida albicans
ctp Candida tropicalis
cot Candida orthopsilosis
cdu Candida dubliniensis
cten Yamadazyma tenuis
yli Yarrowia lipolytica
clu Clavispora lusitaniae ATCC 42720
clus Clavispora lusitaniae CBS 6936
caur Candida auris
slb Sugiyamaella lignohabitans
pkz Pichia kudriavzevii
bnn Brettanomyces nanus
bbrx Brettanomyces bruxellensis
opa Ogataea parapolymorpha
slud Saccharomycodes ludwigii
ncr Neurospora crassa
nte Neurospora tetrasperma
smp Sordaria macrospora
pan Podospora anserina
ttt Thermothielavioides terrestris
mtm Thermothelomyces thermophilus
cthr Thermochaetoides thermophila
mgr Pyricularia oryzae
ppei Pyricularia pennisetigena
tmn Phaeoacremonium minimum
ssck Sporothrix schenckii
fgr Fusarium graminearum
fpu Fusarium pseudograminearum
fvr Fusarium verticillioides
fox Fusarium oxysporum
nhe Fusarium vanettenii
tre Trichoderma reesei QM6a
trr Trichoderma reesei RUT C-30
maw Metarhizium acridum
maj Metarhizium robertsii
cmt Cordyceps militaris
plj Purpureocillium lilacinum
val Verticillium alfalfae
vda Verticillium dahliae
cfj Colletotrichum fioriniae
clup Colletotrichum lupini
chig Colletotrichum higginsianum
sapo Scedosporium apiospermum
ela Eutypa lata
pfy Pestalotiopsis fici
ssl Sclerotinia sclerotiorum
bfu Botrytis cinerea (Gray mold)
mbe Drepanopeziza brunnea
psco Mollisia scopiformis
glz Glarea lozoyensis
ani Aspergillus nidulans
afm Aspergillus fumigatus
act Aspergillus clavatus
nfi Aspergillus fischeri
aor Aspergillus oryzae
ang Aspergillus niger (black aspergilli)
afv Aspergillus flavus
aluc Aspergillus luchuensis
ache Aspergillus chevalieri
apuu Aspergillus puulaauensis
pcs Penicillium rubens
pdp Penicillium digitatum
tmf Talaromyces marneffei
trg Talaromyces rugulosus
cim Coccidioides immitis
cpw Coccidioides posadasii
ure Uncinocarpus reesii
pbl Paracoccidioides lutzii Pb01
pbn Paracoccidioides brasiliensis
abe Trichophyton benhamiae
tve Trichophyton verrucosum
aje Histoplasma mississippiense
bgh Blastomyces gilchristii
pno Parastagonospora nodorum
pte Pyrenophora teres
bze Bipolaris zeicola
bsc Bipolaris sorokiniana
bor Bipolaris oryzae
aalt Alternaria alternata
ztr Zymoseptoria tritici
pfj Pseudocercospora fijiensis
ffu Fulvia fulva
bcom Baudoinia panamericana
npa Neofusicoccum parvum
tml Tuber melanosporum
spo Schizosaccharomyces pombe (fission yeast)
cne Cryptococcus neoformans var. neoformans JEC21
cnb Cryptococcus neoformans var. neoformans B-3501A
cng Cryptococcus neoformans var. grubii H99
cgi Cryptococcus gattii
tms Tremella mesenterica
tasa Trichosporon asahii var. asahii
ppl Postia placenta
tvs Trametes versicolor
dsq Dichomitus squalens
pco Phanerochaete carnosa
shs Stereum hirsutum
hir Heterobasidion irregulare
psq Punctularia strigosozonata
adl Auricularia subglabra
fme Fomitiporia mediterranea
gtr Gloeophyllum trabeum
lbc Laccaria bicolor
cci Coprinopsis cinerea
abp Agaricus bisporus var. burnettii JB137-S8
abv Agaricus bisporus var. bisporus H97
pcub Psilocybe cubensis (magic mushroom)
mpr Moniliophthora perniciosa
mrr Moniliophthora roreri
more Marasmius oreades (fairy-ring mushroom)
scm Schizophyllum commune
cput Coniophora puteana
sla Serpula lacrymans
wse Wallemia mellicola
wic Wallemia ichthyophaga
uma Ustilago maydis
pfp Pseudozyma flocculosa
mgl Malassezia globosa
mrt Malassezia restricta
msym Malassezia sympodialis
pgr Puccinia graminis
mlr Melampsora larici-populina
ecu Encephalitozoon cuniculi
ein Encephalitozoon intestinalis
ehe Encephalitozoon hellem
ero Encephalitozoon romaleae
nce Nosema ceranae
mbr Monosiga brevicollis
sre Salpingoeca rosetta
ddi Dictyostelium discoideum (cellular slime mold)
dpp Dictyostelium purpureum (cellular slime mold)
dfa Cavenderia fasciculata (cellular slime mold)
ehi Entamoeba histolytica
edi Entamoeba dispar
eiv Entamoeba invadens
acan Acanthamoeba castellanii
pfa Plasmodium falciparum 3D7
pfd Plasmodium falciparum Dd2
pfh Plasmodium falciparum HB3
prei Plasmodium reichenowi
pgab Plasmodium gaboni
pyo Plasmodium yoelii
pcb Plasmodium chabaudi
pbe Plasmodium berghei
pvv Plasmodium vinckei vinckei
pkn Plasmodium knowlesi
pvx Plasmodium vivax
pcy Plasmodium cynomolgi
tan Theileria annulata
tpv Theileria parva
tot Theileria orientalis
beq Theileria equi
bbo Babesia bovis
bmic Babesia microti
bbig Babesia bigemina
cpv Cryptosporidium parvum
cho Cryptosporidium hominis
tgo Toxoplasma gondii
tet Tetrahymena thermophila
ptm Paramecium tetraurelia
smin Breviolum minutum
pti Phaeodactylum tricornutum
fcy Fragilariopsis cylindrus
tps Thalassiosira pseudonana
ngd Nannochloropsis gaditana
aaf Aureococcus anophagefferens
pif Phytophthora infestans
psoj Phytophthora sojae
spar Saprolegnia parasitica
ehx Emiliania huxleyi
gtt Guillardia theta
tbr Trypanosoma brucei brucei
tbg Trypanosoma brucei gambiense
tcr Trypanosoma cruzi
lma Leishmania major
lif Leishmania infantum
ldo Leishmania donovani
lmi Leishmania mexicana
lbz Leishmania braziliensis
lpan Leishmania panamensis
ngr Naegleria gruberi
tva Trichomonas vaginalis
gla Giardia lamblia
eco Escherichia coli K-12 MG1655
ecj Escherichia coli K-12 W3110
ecd Escherichia coli K-12 DH10B
ebw Escherichia coli K-12 BW2952
ecok Escherichia coli K-12 MDS42
ece Escherichia coli O157:H7 EDL933 (EHEC)
ecs Escherichia coli O157:H7 Sakai (EHEC)
ecf Escherichia coli O157:H7 EC4115 (EHEC)
etw Escherichia coli O157:H7 TW14359 (EHEC)
elx Escherichia coli O157:H7 Xuzhou21 (EHEC)
eoi Escherichia coli O111:H- 11128 (EHEC)
eoj Escherichia coli O26:H11 11368 (EHEC)
eoh Escherichia coli O103:H2 12009 (EHEC)
ecoo Escherichia coli O145:H28 RM13514 (EHEC)
ecoh Escherichia coli O145:H28 RM13516 (EHEC)
esl Escherichia coli O104:H4 2011C-3493 (EAEC)
eso Escherichia coli O104:H4 2009EL-2071 (EAEC)
esm Escherichia coli O104:H4 2009EL-2050 (EAEC)
eck Escherichia coli 55989 (EAEC)
ecg Escherichia coli O127:H6 E2348/69 (EPEC)
eok Escherichia coli O55:H7 CB9615 (EPEC)
elr Escherichia coli O55:H7 RM12579 (EPEC)
elh Escherichia coli O78:H11:K80 H10407 (ETEC)
ecw Escherichia coli O139:H28 E24377A (ETEC)
eun Escherichia coli UMNK88 (ETEC, porcine)
ecp Escherichia coli O6:K15:H31 536 (UPEC)
ena Escherichia coli NA114 (UPEC)
ecos Escherichia coli O25b:K100:H4-ST131 EC958 (UPEC)
ecv Escherichia coli APEC O1 (APEC)
ecoa Escherichia coli APEC O78 (APEC)
ecx Escherichia coli O9 HS (commensal)
ecm Escherichia coli SMS-3-5 (environmental)
ecy Escherichia coli O152:H28 SE11 (commensal)
ecr Escherichia coli O8 IAI1 (commensal)
ecq Escherichia coli O81 ED1a (commensal)
eum Escherichia coli O17:K52:H18 UMN026 (ExPEC)
ect Escherichia coli O7:K1 IAI39 (ExPEC)
eoc Escherichia coli O7:K1 CE10
ebr Escherichia coli B REL606
ebl Escherichia coli BL21(DE3)
ebe Escherichia coli BL21(DE3)
ebd Escherichia coli BL21-Gold(DE3)pLysS AG
eci Escherichia coli O18:K1:H7 UTI89 (UPEC)
eih Escherichia coli O18:K1:H7 IHE3034 (ExPEC)
ecz Escherichia coli O45:K1:H7 S88 (ExPEC)
ecc Escherichia coli O6:K2:H1 CFT073 (UPEC)
elo Escherichia coli O44:H18 042 (EAEC)
eln Escherichia coli O83:H1 NRG 857C (AIEC)
ese Escherichia coli O150:H5 SE15 (commensal)
ecl Escherichia coli ATCC 8739
eko Escherichia coli KO11FL
ekf Escherichia coli KO11FL
eab Escherichia coli ABU 83972
edh Escherichia coli DH1
edj Escherichia coli DH1
elu Escherichia coli UM146
elw Escherichia coli W
ell Escherichia coli W
elc Escherichia coli clone D i14
eld Escherichia coli clone D i2
elp Escherichia coli P12b
elf Escherichia coli LF82
ecol Escherichia coli LY180
ecoi Escherichia coli O18:K1 PMV-1 (ExPEC)
ecoj Escherichia coli JJ1886
efe Escherichia fergusonii
eal Escherichia albertii
ema Escherichia marmotae
esz Escherichia sp. E4742
sty Salmonella enterica subsp. enterica serovar Typhi CT18
stt Salmonella enterica subsp. enterica serovar Typhi Ty2
sex Salmonella enterica subsp. enterica serovar Typhi P-stx-12
sent Salmonella enterica subsp. enterica serovar Typhi Ty21a
stm Salmonella enterica subsp. enterica serovar Typhimurium LT2
seo Salmonella enterica subsp. enterica serovar Typhimurium 14028S
sev Salmonella enterica subsp. enterica serovar Typhimurium D23580
sey Salmonella enterica subsp. enterica serovar Typhimurium SL1344
sem Salmonella enterica subsp. enterica serovar Typhimurium T000240
sej Salmonella enterica subsp. enterica serovar Typhimurium UK-1
seb Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
sef Salmonella enterica subsp. enterica serovar Typhimurium 798
setu Salmonella enterica subsp. enterica serovar Typhimurium U288
setc Salmonella enterica subsp. enterica serovar Typhimurium var. 5- CFSAN001921
senr Salmonella enterica subsp. enterica serovar Typhimurium DT2
send Salmonella enterica subsp. enterica serovar Typhimurium DT104
seni Salmonella enterica subsp. enterica serovar Typhimurium 138736
seen Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
spt Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
sek Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
spq Salmonella enterica subsp. enterica serovar Paratyphi B
sei Salmonella enterica subsp. enterica serovar Paratyphi C
sec Salmonella enterica subsp. enterica serovar Choleraesuis
seh Salmonella enterica subsp. enterica serovar Heidelberg SL476
shb Salmonella enterica subsp. enterica serovar Heidelberg B182
senh Salmonella enterica subsp. enterica serovar Heidelberg CFSAN002069
seeh Salmonella enterica subsp. enterica serovar Heidelberg 41578
see Salmonella enterica subsp. enterica serovar Newport SL254
senn Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
sew Salmonella enterica subsp. enterica serovar Schwarzengrund
sea Salmonella enterica subsp. enterica serovar Agona SL483
sens Salmonella enterica subsp. enterica serovar Agona 24249
sed Salmonella enterica subsp. enterica serovar Dublin
seg Salmonella enterica subsp. enterica serovar Gallinarum 287/91
sel Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078
sega Salmonella enterica subsp. enterica serovar Gallinarum/pullorum CDC1983-67
set Salmonella enterica subsp. enterica serovar Enteritidis P125109
sena Salmonella enterica subsp. enterica serovar Enteritidis EC20090135
seno Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
senv Salmonella enterica subsp. enterica serovar Enteritidis EC20090332
senq Salmonella enterica subsp. enterica serovar Enteritidis EC20090531
senl Salmonella enterica subsp. enterica serovar Enteritidis OLF-SE1-1019-1
senj Salmonella enterica subsp. enterica serovar Javiana
seec Salmonella enterica subsp. enterica serovar Cubana
seeb Salmonella enterica subsp. enterica serovar Bareilly
seep Salmonella enterica subsp. enterica serovar Pullorum
senb Salmonella enterica subsp. enterica serovar Bovismorbificans
sene Salmonella enterica subsp. enterica serovar Thompson
senc Salmonella enterica subsp. enterica serovar Tennessee
ses Salmonella enterica subsp. arizonae
sbg Salmonella bongori NCTC 12419
sbz Salmonella bongori N268-08
sbv Salmonella bongori serovar 48:z41:--
salz Salmonella sp. SSDFZ69
sfl Shigella flexneri 301 (serotype 2a)
sfx Shigella flexneri 2457T (serotype 2a)
sfv Shigella flexneri 8401 (serotype 5b)
sfe Shigella flexneri 2002017 (serotype Fxv)
sfn Shigella flexneri 2003036
sfs Shigella flexneri Shi06HN006 (serotype Yv)
sft Shigella flexneri NCTC1 (serotype 2a)
ssn Shigella sonnei Ss046
sbo Shigella boydii Sb227 (serotype 4)
sbc Shigella boydii CDC 3083-94 (serotype 18)
sdy Shigella dysenteriae Sd197
sdz Shigella dysenteriae 1617 (serotype 1)
shq Shigella sp. PAMC 28760
enc Enterobacter cloacae subsp. cloacae ATCC 13047
enl Enterobacter cloacae subsp. dissolvens SDM
eclg Enterobacter cloacae GGT036
ecle Enterobacter cloacae ECNIH2
ecln Enterobacter cloacae ECNIH4
ecli Enterobacter cloacae ECNIH5
eclx Enterobacter hormaechei subsp. xiangfangensis
ecly Enterobacter hormaechei subsp. steigerwaltii
eclz Enterobacter hormaechei subsp. hormaechei
eclo Enterobacter hormaechei NCTC 9394
ehm Enterobacter hormaechei CAV1176
exf Enterobacter hormaechei subsp. xiangfangensis
ecla Enterobacter hormaechei subsp. hoffmannii ECNIH3
eclc Enterobacter hormaechei subsp. hoffmannii ECR091
eau Enterobacter asburiae L1
ekb Enterobacter kobei DSM 13645
eno Enterobacter kobei ENHKU01
eec Enterobacter ludwigii EcWSU1
elg Enterobacter ludwigii EN-119
ecan Enterobacter cancerogenus
ern Enterobacter roggenkampii DSM 16690
ecls Enterobacter roggenkampii 35734
echg Enterobacter chengduensis
esh Enterobacter sichuanensis
ent Enterobacter sp. 638
eas Enterobacter soli
enr Enterobacter sp. R4-368
enx Enterobacter sp. E20
enf Enterobacter sp. FY-07
lni Enterobacter sp. SGAir0187
ebg Enterobacter bugandensis
end Enterobacter sp. ODB01
enz Enterobacter sp. T2
ens Enterobacter sp. DSM 30060
enk Enterobacter sp. AN-K1
ehu Enterobacter huaxiensis
emor Enterobacter mori
enb Enterobacter sp. N18-03635
esa Cronobacter sakazakii ATCC BAA-894
csk Cronobacter sakazakii ES15
csz Cronobacter sakazakii Sp291
csj Cronobacter sakazakii ATCC 29544
ccon Cronobacter condimenti
cdm Cronobacter dublinensis