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README.html
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<body>
<!-- README.md is generated from README.Rmd. Please edit that file -->
<h1 id="whozr">whozr</h1>
<!-- badges: start -->
<p><a href="https://github.com/simisc/whozr/actions/workflows/check-standard.yaml"><img src="data:text/plain; charset=utf-8;charset=utf-8,Not%20Found" alt="check-standard" /></a> <a href="https://zenodo.org/badge/latestdoi/113995327"><img src="data:image/svg+xml; charset=utf-8;base64,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" alt="DOI" /></a> <a href="https://github.com/simisc/whozr/blob/master/LICENSE"><img src="data:image/svg+xml;charset=utf-8;base64,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" alt="Licence" /></a> <a href="https://www.tidyverse.org/lifecycle/#stable"><img src="data:image/svg+xml;charset=utf-8;base64,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" alt="Lifecycle" /></a> <a href="https://codecov.io/gh/simisc/whozr"><img src="data:image/svg+xml;base64,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" alt="codecov" /></a></p>
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<p>Convert raw anthropometric measurement (weight, height, length, BMI, MUAC, head circumeference, tricep skinfold and subscapular skinfold) to z-scores, using the WHO growth standards (0-5 years) and/or references (5-19 years).</p>
<p>Also allows the ‘reverse’ calculation of original anthropometry measures from z-scores (requires further testing).</p>
<h2 id="installation">Installation</h2>
<p>You can install whozr from github with:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true"></a><span class="co"># install.packages("remotes")</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true"></a>remotes<span class="op">::</span><span class="kw">install_github</span>(<span class="st">"simisc/whozr"</span>)</span></code></pre></div>
<h2 id="example">Example</h2>
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true"></a><span class="kw">library</span>(dplyr) <span class="co"># tibble(), mutate()</span></span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true"></a><span class="kw">library</span>(knitr) <span class="co"># kable()</span></span>
<span id="cb2-3"><a href="#cb2-3" aria-hidden="true"></a><span class="kw">library</span>(whozr) <span class="co"># zwa(), zla(), zwl()</span></span></code></pre></div>
<div class="sourceCode" id="cb3"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true"></a><span class="kw">tibble</span>(</span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true"></a> <span class="dt">sex =</span> <span class="kw">c</span>(<span class="st">"F"</span>, <span class="st">"M"</span>, <span class="st">"M"</span>, <span class="st">"F"</span>),</span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true"></a> <span class="dt">age_days =</span> <span class="kw">c</span>(<span class="dv">120</span>, <span class="dv">310</span>, <span class="dv">370</span>, <span class="dv">460</span>),</span>
<span id="cb3-4"><a href="#cb3-4" aria-hidden="true"></a> <span class="dt">weight_kg =</span> <span class="kw">c</span>(<span class="fl">5.98</span>, <span class="fl">8.09</span>, <span class="fl">8.40</span>, <span class="fl">8.46</span>),</span>
<span id="cb3-5"><a href="#cb3-5" aria-hidden="true"></a> <span class="dt">length_cm =</span> <span class="kw">c</span>(<span class="fl">60.2</span>, <span class="fl">70.7</span>, <span class="fl">72.6</span>, <span class="fl">74.9</span>)</span>
<span id="cb3-6"><a href="#cb3-6" aria-hidden="true"></a>) <span class="op">|</span><span class="er">></span></span>
<span id="cb3-7"><a href="#cb3-7" aria-hidden="true"></a><span class="st"> </span><span class="kw">mutate</span>(</span>
<span id="cb3-8"><a href="#cb3-8" aria-hidden="true"></a> <span class="dt">waz =</span> <span class="kw">zwa</span>(weight_kg, age_days, sex),</span>
<span id="cb3-9"><a href="#cb3-9" aria-hidden="true"></a> <span class="dt">laz =</span> <span class="kw">zla</span>(length_cm, age_days, sex),</span>
<span id="cb3-10"><a href="#cb3-10" aria-hidden="true"></a> <span class="dt">wlz =</span> <span class="kw">zwl</span>(weight_kg, length_cm, sex)</span>
<span id="cb3-11"><a href="#cb3-11" aria-hidden="true"></a> ) <span class="op">|</span><span class="er">></span></span>
<span id="cb3-12"><a href="#cb3-12" aria-hidden="true"></a><span class="st"> </span><span class="kw">kable</span>(<span class="dt">digits =</span> <span class="dv">3</span>)</span></code></pre></div>
<table>
<thead>
<tr class="header">
<th align="left">sex</th>
<th align="right">age_days</th>
<th align="right">weight_kg</th>
<th align="right">length_cm</th>
<th align="right">waz</th>
<th align="right">laz</th>
<th align="right">wlz</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">F</td>
<td align="right">120</td>
<td align="right">5.98</td>
<td align="right">60.2</td>
<td align="right">-0.539</td>
<td align="right">-0.818</td>
<td align="right">0.101</td>
</tr>
<tr class="even">
<td align="left">M</td>
<td align="right">310</td>
<td align="right">8.09</td>
<td align="right">70.7</td>
<td align="right">-1.186</td>
<td align="right">-1.229</td>
<td align="right">-0.723</td>
</tr>
<tr class="odd">
<td align="left">M</td>
<td align="right">370</td>
<td align="right">8.40</td>
<td align="right">72.6</td>
<td align="right">-1.296</td>
<td align="right">-1.398</td>
<td align="right">-0.846</td>
</tr>
<tr class="even">
<td align="left">F</td>
<td align="right">460</td>
<td align="right">8.46</td>
<td align="right">74.9</td>
<td align="right">-1.065</td>
<td align="right">-0.996</td>
<td align="right">-0.859</td>
</tr>
</tbody>
</table>
</body>
</html>