CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file. Dates are displayed in UTC.

Generated by auto-changelog.

v0.13.0

• Feature/information panel #532
• don't clear sim file when cancelling autoconversion #542
• remove title from embed view #540
• both sidebars get full height on embed #541
• Fix/small screen warning #539
• Fix/default octopus #530
• update viewer version to 3.8.1 #527

v0.12.1

28 May 2024

• Bug Fix: Plots not showing up for example trajectories #524

v0.12.0

28 May 2024

• Fix/send cancel autoconversion msg #520
• autoconversion: Fix/conversion filename bug #486
• Feature/state enums #521
• Fix/plot data update #522
• modify plot data unpacking #517
• Feature/max file size #518
• Feature/button constant #501
• play button shouldn't be disabled at the last frame #504
• merge autoconversion to main #502
• point at octopus cluster #500
• Feature/record movie UI #483
• Bump gh-pages from 3.2.3 to 5.0.0 #499
• rename some functions and test for clarity #496
• add more detailed documentation #494
• Bump express from 4.18.2 to 4.19.2 #485
• Bump follow-redirects from 1.15.4 to 1.15.6 #479
• Fix/update custom modal #482
• Fix/header buttons #484
• Bump webpack-dev-middleware from 5.3.3 to 5.3.4 #481
• fix/hide tooltips after click #477
• feature/viewport button component #478
• update viewer to 3.7.1 68b7a96

v0.11.0

18 March 2024

• Fix/icomoon #476
• Feature/embed #474
• fix: organize colors, modal buttons #473
• reverse home page card order #472
• fix the html loader result #475
• Feature/og tags #463
• Fix/nav tooltips #469
• Bump es5-ext from 0.10.62 to 0.10.64 #471
• set slider range props to false and remove array from handler argument types #470
• Fix/url modal #466
• Fix/bump react #461
• Bump follow-redirects from 1.15.2 to 1.15.4 #460
• Bump plotly.js from 2.20.0 to 2.25.2 #457
• open aics homepage in new tab #454
• Feature/color picker #432
• Bump @adobe/css-tools from 4.3.1 to 4.3.2 #449
• Bump axios from 0.21.4 to 1.6.0 #447
• check if it's a dependabot PR #450
• Bump @babel/traverse from 7.20.5 to 7.23.2 #442
• Fix/share download styling #448
• add time estimate or size to PR template 80017da
• Update test-coverage.yml 37a5fee
• Update test-coverage.yml f926754

v0.10.0

23 October 2023

• update viewer and fix types #445
• fix menus offsets #440
• Feature/version info #423
• Update ux_issue.md #433
• change check for if a file is shareable #439
• audit fix #437
• Feature/orthographic UI #430
• Feature/share time url #424
• change gh-deploy to be a dev build #426
• Update CONTRIBUTING.md #425
• Feature/download trajectory #422
• looping playback and tooltip styling #417
• Bump json5 from 1.0.1 to 1.0.2 #404
• Bump webpack from 5.75.0 to 5.76.0 #401
• Bump d3-color and plotly.js #399
• Bump loader-utils and typescript-plugin-css-modules #398
• Bump decode-uri-component from 0.2.0 to 0.2.2 #382
• Update ux_issue.md #393
• File upload modal rework and styling #392
• ui components for share time in url 9e50b00
• remove now-unused LocalFileUpload component 2a1c111
• shift style rules, add light theme, remove buffer 225ebfd

v0.9.0

19 February 2023

• add a default collapsed #397
• Url Upload Auto Focus #373
• Clean up 3c66ae3
• Actually fixed the issue f795b9a
• Restored tabbing targeting to the close button and submit button 639c76f

v0.8.2

13 January 2023

• Make staging and prod configs more similar #383
• remove hashedmoduleidsplugin, and console.log out some version info, and don't show devserver overlay for warnings only 0adfc14
• update viewer to 3.5.1 1222953
• make production and staging as similar as possible 42d536d

v0.8.0

15 December 2022

• push builds to new buckets #380
• add bloodplasma card #374
• Fix/load viewer webworker #376
• Bump ejs and webpack-bundle-analyzer #365
• Bump node-forge and webpack-dev-server #361
• Bump jsdom from 13.1.0 to 16.5.0 #350
• Feature/update workflows #364
• resolving peer deps 8bda641
• fix typescript and lint errors 2a009ba
• update postcss 3089098

v0.7.1

19 September 2022

• Feature/shorten names #363
• Bump moment from 2.29.3 to 2.29.4 #354
• Bump terser from 4.8.0 to 4.8.1 #353
• Bump eventsource from 1.1.0 to 1.1.1 #349
• update viewer to 3.3.3 93eea78
• Update ux_issue.md e1ed1a5
• update viewer to 3.4.0 5d10b7d

v0.7.0

25 July 2022

• fix loading from url, was still assuming pure json format #345
• won't show time controls if there is no time range #343
• Feature/update drag n drop #339
• Bump moment from 2.29.1 to 2.29.2 #337
• Bump minimist from 1.2.5 to 1.2.6 #333
• reimplement drag and drop after viewer interface changes e5c4b91
• refresh package-lock f4c8991
• update viewer 3b35346

v0.6.2

11 April 2022

• fix issue after merge main #336
• added citation #334
• fix horizontal scroll #332
• add image 285ea6e
• adjustments to get title on one line 0668772
• some mobile styling ba5c5c2

v0.6.1

10 March 2022

• Feature/update overview figure on landing page #330
• Fix/can't use arrow keys in input box of Upload by URL modal #323
• Bump url-parse from 1.5.3 to 1.5.10 #325
• Fix/current time is hard to read when number of decimal places keeps changing #317
• Bump follow-redirects from 1.14.7 to 1.14.8 #316
• Feature/place visual glossary key next to image on wider screens #314
• Fix/menus go off screen sometimes #312
• Feature/update visual glossary and landing page image #313
• Add return type to React components #307
• Update eslint from v5.14.1 to v8.7.0 #306
• Bump node-fetch from 2.6.5 to 2.6.7 #305
• Bump follow-redirects from 1.5.10 to 1.14.7 #301
• Fix/server error messages not displaying #303
• add UX design issue template 7f23878

v0.6.0

19 January 2022

• Fix/nav bar overflowing when title is long #290
• Update viewer to v3.3.1 #299
• Update GitHub URLs to reflect new Simularium org #293
• Fix/can't step back to first frame of some trajectories #291
• Fix/previous trajectory persists when new trajectory fails to load #287
• Fix/old error message comes back after going to landing page #285
• Feature/treat warning messages as warnings #284
• Update viewer from v3.1.0 to v3.2.2 #278
• add workflow to create issue dfae6f2
• create issue only when opened 16e2a52
• Add @simularium/core-devs to CODEOWNERS 2c278d7

v0.5.1

2 November 2021

• Fix/agent list sometimes not loading for drag-and-drop #275

v0.5.0

1 November 2021

• Feature/auto-expand agent groups with no parent color #272
• update viewer #271
• remove unmodified state #265
• Feature/update viewer #262
• Fix/file load error handling #259
• Fix/broken styling in agent list #260
• Feature/update loading and sharing instructions in Quick Start #257
• Fix/spelling for Omar Quintero in acknowledgments #258
• Feature/load local geometry files #253
• Feature/list visualization options on landing page #256
• install new viewer and audit 094ee25
• remove agentColor map from state d5474c8
• using color from display data a5aceb0

v0.4.0

28 September 2021

• Feature/allow v3 trajectories to load (update viewer to v3.0.0) #248
• Feature/update landing page header #245
• Feature/acknowledgments on landing page #243
• Update ACKNOWLEDGEMENTS.md #240
• Feature/menu option for load file from URL #236
• Fix/time input box is too narrow sometimes #235
• Feature/add reminder for release notes to CONTRIBUTING.md #234
• Add tests for ResultsPanel selectors (100% coverage for all selectors) #231
• Fix/make clearTrajectory just reset to initialState #232

v0.3.0

10 August 2021

• Feature/auto-changelog #233
• Fix/ "Show/Hide All" checkbox bugs (Add tests for ModelPanel selectors) #230
• 100% test coverage of state selectors + some cleanup #229
• Put basic and composed selectors in separate files #227
• Rename some redundant variable names in state.viewer #228
• Reorganize Redux state #225
• Fix/selector code coverage #224
• add coverage action #223
• Replace agentviz with simularium in S3 URLs and in React app name #222
• Update deploy-production.yml #221
• Update auto-deploy-staging.yml #220
• Fix/update SpringSaLaD publication and redirect related URLs #219
• Fix/remove CopyWebpackPlugin #210
• Feature/let user know that Google Drive is supported #215
• Remove unused dependencies #212
• 100% test coverage of util functions #209
• Feature/migrate Mocha/Chai to Jest #195
• Feature/post example models for SpringSaLaD and MEDYAN #190
• Update markdown files #186
• Fix/remove Gradle, Jenkins, Pipfile, and Docker #187
• Fix/excessively wide time input box #173
• Add issue template for Maintenance Task #177
• Change master to main in code #178
• changed order to match file order, added tests 9900fbd
• cover all functions with tests 9dc3e29
• cover 100 of util branches 296ac4a

v0.2.2

2 July 2021

• updated viewer and npm audit fix #172
• Update viewer version to 2.9.6 #170
• Fix/google drive links #161
• Change "Type of change" items from checkboxes to bullets #162
• Add instructions for sharing link #157
• Fix/in modified state still click buttons #151
• Feature/change reset hotkey #155
• Feature/toggle tooltips pan/rotate #152
• Feature/focus button #143
• Feature/rotate pan buttons #140
• Add new bullet items for new supported engines #147
• Feature/set time with text input #137
• Fix/make Membrane Wrapping a Nanoparticle load #141
• Feature/add nanoparticle and Smoldyn models to landing page #138
• allow devs to override the google api key for local dev 7baab7f
• Fix/file switching bugs (update viewer to v2.9.5) #156 64cfad5
• update viewer to the latest version 531e27a

v0.2.1

11 June 2021

• Fix/build script #134
• Feature/make error message more informative upon trajUrl fail #133
• add inline env var to build scripts eda8551

v0.2.0

10 June 2021

• Fix/enable Dropbox links in URL param #132
• remove autodeploy scripts from jenkins file #131
• Update viewer to 2.9.3 #130
• Fix/floating point time errors (update viewer to v2.9.2) #129
• Feature/publish gh actions #128
• Feature/use full AICS logo in nav bar #126
• Update simularium-viewer to 2.9.0 #125
• Feature/viewer controller refactor #124
• Feature/version number badges #123
• Fix/update lint-staged from 8.1.4 to 10.5.4 #122
• Fix/slider freezing issues #121
• Fix/ not being able to step to last frame #119
• Round scale bar label #120
• Fix/update viewer to 2.7.3 to fix scale bar label #118
• Update simularium viewer to 2.7.2 #117
• Update simularium-viewer to 2.7.1 #116
• Feature/display user-set time units #115
• Feature/load file url #114
• fix/COVID simulated time on landing page card #112
• removed highlightId code #111
• Feature/lazy update of time indicator on plots #110
• Bump axios from 0.19.2 to 0.21.1 #106
• Fix/only re-render plots that have the time indicator bar #109
• Fix/simulation keeps playing when user is trying to scrub #107
• Fix/"skip 1 frame back" button is not disabled when starting time is not 0 #108
• Feature/add tooltips to left panel #105
• Fix/wrap long plot titles #97
• Fix/stop play on navigation #101
• Feature/make visual glossary data-driven #104
• Feature/add version to covid trajectory title #103
• adjusted colors of disabled buttons #100
• Feature/update image assets #102
• Feature/landing page edits from legal and comms #99
• Fix/svgs as fonts #93
• disable play and slider on empty viewer #96
• Feature/Show a "Reset views" button on plot hover #98
• Feature/add Cookie Settings button #95
• admin/update readme #94
• Fix/disable Load Model dropdown while buffering #92
• Fix/lift is playing up #89
• reset sim file data between loads, and clear out blank viewer #88
• style disabled buttons through antd #91
• Fix/remove scientific notation from playback time #90
• Feature/Save lastFrameTime as metadata only after first frame loads #87
• Feature/Add tick marks to plots and upgrade viewer to v2.5.2 #86
• reload trajectory if reselected #84
• Feature/add more plot trace colors #85
• Feature/scale bar #83
• Fix/"Load an example instead" link in left panel of empty viewer #81
• fix/time unit not updating in total time #80
• Feature/swap listeria card with new covid card #82
• Feature/unsupported browser warning #79
• Feature/add visual glossary #77
• feature/update landing page and help menu #76
• Feature/add screenshots to the PR template checklist #78
• fix/replace icon on drag-drop overlay #75
• Feature/add-blank-library-card-to-landing-page #73
• feature/update simularium-viewer to v2.4.9 #72
• Feature/display time next to slider #67
• Fix/error message networked #71
• Fix/playback buttons not showing spinner when loading or buttons freezing when scrubbing #68
• Fix/downloadable trajectory link on tutorial page #70
• Feature/update landing page copy #69
• Feature/zoom buttons #66
• Feature/header-redesign #64
• new viewer install #65
• Feature/open tutorial page in new tab and move playback buttons to left #63
• Feature/change skip frame icons and add tooltips to viewer buttons #62
• Feature/add time indicator line to time plots #61
• errors with env vars #59
• Feature/style plots #58
• Fix/staging production builds #55
• Fix/make landing and tutorial pages more responsive #52
• Fix/pause at end of file #57
• update viewer #56
• removed focus blue outline from canvas #53
• Fix/loading #51
• Feature/ Use real screenshots for library cards #50
• Feature/style reset button #47
• Update/ tutorial text #49
• clean url for single page app routing on aws #48
• Feature/Add favicon #46
• Fix/"Import simularium file" button width #44
• Fix/ui panel #45
• Feature/display errors #42
• Feature/loading indicator #41
• Feature/display name #40
• Feature/agent colors #38
• Feature/file extension #37
• styling playback controls #34
• Feature/unmodified state #30
• Feature/clear out params #29
• Feature/header design #26
• Feature/new ui selection interface #28
• Feature/agent vis ui #24
• adding GA tags #25
• Feature/upload style #18
• Local file plot data (and updated request for networked files) #17
• config for npm scripts and gh deploy #15
• File upload by dialog and drag and drop #16
• Feature/select highlight agents #13
• Nightly viewer install #14
• Feature/tutorial routing #12
• New viewer #11
• Feature/router #10
• Fix/slider scrub #9
• Fix/datgui types #8
• added scripts for gh actions #6
• Feature/new viewer #7
• Fix/time drag n drop #3
• Feature/url open file #4
• installed observable manager #2
• Update Simularium Viewer #1
• reinstall 54c8b36
• fresh install be72c0a
• run npm install 6a8c5e1